1 | #!/bin/bash |
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2 | |
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3 | #set -vx |
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4 | |
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5 | #============================================================================= |
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6 | # F. Hourdin : 2022/05/03 |
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7 | # |
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8 | # Objet : |
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9 | # ----- |
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10 | # Script préparant les programes pour rejouer (replay) une paramétrisation |
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11 | # ou un morceau de paramétriation. |
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12 | # |
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13 | # |
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14 | # Applicabilité : |
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15 | # --------------- |
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16 | # Est fait pour rejouer des paramétisation de LMDZ organisées comme |
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17 | # des calcul sur des successions de colonnes indépendantes (boucle |
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18 | # interne en $klon) de $klev niveaux verticaux. |
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19 | # Demande que la paramétrisation répondent aux règles de codage suivantes : |
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20 | # 1) Les routines de calcul et les routines ou fonctions qu'elles appellent |
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21 | # n'ont que deux interfaces : A) les arguments d'entrée |
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22 | # B) le use d'un unique module |
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23 | # Entre autre, les dimensions de la paramétrisation sont passés |
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24 | # en argument, ce qui permet une allocation dynamique implicite |
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25 | # de toutes les variables. |
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26 | # 2) le module d'initialisation doit lui même être initialisé par |
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27 | # une unique routine pilotée entièrement par ses arguments. |
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28 | # 3) Toutes les variables d'interface doivent être déclarées intent in |
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29 | # out, ou inout |
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30 | # On appelera la paramétriation "param" et l'intialisation "param_ini" |
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31 | # mais les noms de fichiers sont en argument dans le script. |
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32 | # |
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33 | # |
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34 | # Principe : |
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35 | # ---------- |
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36 | # Dans une première simulation, on écrit dans un fichier binaire toutes |
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37 | # les variables "intent in/inout" de la routine d'initialisation et de la routine |
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38 | # de calcul. |
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39 | # |
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40 | # |
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41 | # En pratique : |
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42 | # ------------- |
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43 | # |
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44 | # Le script a comme argument le nom de la routine à traiter, nommée $param |
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45 | # Des correpspondances en déduisent : |
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46 | # paramini=wake_ini # nom de la subroutine d'intialisation |
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47 | # inimod= # nom du module contenant $param_ini |
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48 | # klon=klon ; klev=klev # nom des dimensions horiz; vert utilisée |
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49 | # |
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50 | # Le fichier ${paramfile} contenant $param est detecté automatiquement |
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51 | # Le script crée 5 fichiers |
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52 | # * dump_param1.h : écriture de l'interface "in" de param (dump_param.bin fort.82) |
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53 | # * dump_param2.h : écriture des sorties de la routines dans phys.nc |
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54 | # * call_param_replay : sous programme d'appelle en boucle à la param |
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55 | # * dump_ini_module.F90 : écriture de l'interface "in" de param_ini |
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56 | # * get_ini_module : lecture de l'interface "in" de param_ini |
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57 | # dans ${param_ini}_mod.bin. |
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58 | # Par ailleurs, un programme replay1d a été ajouté dans phylmd/dyn1d |
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59 | # qui appelle call_param_replay |
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60 | # Le script ajoute par ailleurs quelques lignes dans ${paramfile} et |
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61 | # ${param_ini}.F90 |
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62 | # replay_clean.sh élimine toutes les lignes ajoutées |
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63 | # |
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64 | # |
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65 | # A travailler : |
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66 | # -------------- |
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67 | # * détecter automatiquement le fichier contenant l'intialisation |
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68 | # * détecter automatiquement les dimensions |
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69 | # * avoir un moyen de vérifier si les variables intent in et out sont |
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70 | # bien les bonnes. |
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71 | # * Initialisation plus simple de la routine getin_p |
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72 | # * Des choix sur la facon de controler l'initialisation et le pb des getin |
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73 | # |
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74 | #============================================================================= |
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75 | |
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76 | #----------------------------------------------------------------------------- |
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77 | # Reading rguments |
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78 | #----------------------------------------------------------------------------- |
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79 | nconly=false |
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80 | where=-before_return |
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81 | |
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82 | if [ $# = 0 ] ; then $0 -h ; exit ; fi |
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83 | while (($# > 0)) |
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84 | do |
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85 | case $1 in |
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86 | -h|--help) cat <<........fin |
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87 | $0 [-nconly] [-ncvars var1,var2,...] [-pre prefix] [location_in_the_code] routine_name |
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88 | The prefix will be put on each variable stored in the nc file to avoid duplicate |
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89 | variables names |
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90 | If -ncvars is not specified, all the variables are output |
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91 | The prefix is used to prevent having twice the same name if the same variable is |
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92 | output at two locations in the code. |
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93 | location_in_the_code can be : -before_return (the default valuer) |
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94 | -after_declarations |
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95 | -before_line "line in code" |
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96 | -after_line "line in code" |
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97 | -before_call "param_name" (TO BE DONE) |
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98 | -after_call "param_name" (TO BE DONE) |
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99 | ........fin |
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100 | exit ;; |
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101 | -nconly) nconly=true ; shift ;; |
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102 | -before_line|-after_line|-before_call|-after_call) where="$1 $2" ; shift ; shift ;; |
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103 | -before_return|-after_declarations) where=$1 ; shift ;; |
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104 | -pre) prefix=$2 ; shift ; shift ;; |
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105 | -ncvars) ncvars="`echo $2 | sed -e 's/,/ /g'`" ; shift ; shift ;; |
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106 | *) if (( $# > 1 )) ; then $0 -h ; exit ; fi ; param=`basename $1 .F90` ; shift |
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107 | esac |
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108 | done |
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109 | if [ "$param" = "" ] ; then $0 -h ; exit ; fi |
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110 | |
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111 | case $param in |
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112 | vdif_k) paramini=None ; inimod=None ; klon=ngrid ; klev=nlay ;; |
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113 | thermcell_main|thermcell_plume_6A|thermcell_env|thermcell_height|thermcell_dry|\ |
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114 | thermcell_closure|thermcell_height|thermcell_dq|thermcell_flux2|thermcell_down| \ |
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115 | thermcell_updown_dq) \ |
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116 | paramini=thermcell_ini ; inimod=thermcell_ini_mod ; klon=ngrid ; klev=nlay ;; |
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117 | wake|wake_popdyn_2) paramini=wake_ini ; inimod=wake_ini_mod ; klon=klon ; klev=klev ;; |
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118 | *) echo Cas non prevu ; exit |
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119 | esac |
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120 | |
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121 | replay_comment="replay automatic include" |
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122 | paraminc1=dump_replay_${param}_head.h |
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123 | paraminc2=dump_replay_${param}_nc_${prefix}.h |
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124 | iniinc=dump_replay_ini.h |
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125 | paramfile=`grep -i "subro.* ${param}[\ (]" *.F90 | sed -e 's/ //g' | grep "${param}(" | cut -d: -f1` |
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126 | echo =================================================================================== |
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127 | echo Equiping $param contained in file $paramfile |
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128 | if [ `echo ${paramfile} | wc -w` != 1 ] ; then echo file $paramfile multiple ; $0 -h ; exit ; fi |
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129 | |
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130 | |
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131 | #----------------------------------------------------------------------------- |
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132 | # Transformer l'entete d'une subroutine en un call |
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133 | #----------------------------------------------------------------------------- |
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134 | |
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135 | function get_subroutine_arg(){ |
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136 | cat $2 | tr '[A-Z]' '[a-z]' > tmp |
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137 | line1=`sed -n -e '/subrou.*'\`echo $1 | tr '[A-Z]' '[a-z]'\`'.*(/=' tmp | head -1 ` |
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138 | line2=`tail -n +$line1 tmp | sed -n -e '/)/=' | head -1` |
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139 | tail -n +$line1 tmp | sed -n -e 1,${line2}p |
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140 | } |
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141 | |
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142 | #----------------------------------------------------------------------------- |
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143 | function dump_param_open(){ |
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144 | #----------------------------------------------------------------------------- |
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145 | # Opening an direct access file with one record per time-step |
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146 | # Each record has the size and contains the arguments in and inout of the |
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147 | # routine |
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148 | #----------------------------------------------------------------------------- |
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149 | inout=$1 ; shift |
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150 | case $inout in |
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151 | out) fort=81 ;; |
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152 | in) fort=82 |
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153 | esac |
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154 | echo '! <<< dump_param_open' |
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155 | for var in $* ; do echo 'rec_length_replay=rec_length_replay+kind('$var')*size(['$var'])' ; done |
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156 | cat <<eod |
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157 | open(${fort},file='dump_param_${inout}.bin',form='unformatted',access='direct',recl=rec_length_replay) ! $replay_comment |
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158 | eod |
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159 | echo '! dump_param_open >>> ' |
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160 | } |
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161 | |
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162 | |
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163 | #----------------------------------------------------------------------------- |
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164 | function extract_subroutine(){ |
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165 | #----------------------------------------------------------------------------- |
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166 | # $1 nom de la subroutine |
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167 | # $2 nom du fichier |
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168 | # input <- routine under treatment with small caps only |
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169 | ( cpp $2 2>/dev/null ) | tr '[A-Z]' '[a-z]' > tmp |
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170 | name_min=`echo $1 | tr '[A-Z]' '[a-z]'` |
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171 | line1=`sed -n -e "/subrou.*${name_min}.*(/=" tmp | head -1 ` |
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172 | tail -n +$line1 tmp > tmp2 |
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173 | line2=`sed -n -e "/[Rr][Ee][Tt][Uu][Rr][Nn]/=" tmp2 | head -1` |
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174 | head -$line2 tmp2 > input |
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175 | \rm -f tmp tmp2 |
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176 | } |
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177 | |
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178 | |
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179 | #----------------------------------------------------------------------------- |
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180 | function include_line(){ |
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181 | #----------------------------------------------------------------------------- |
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182 | # Including param_dump*.h in the parameterization |
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183 | #set -vx |
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184 | line_to_be_included=$1 ; shift |
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185 | param_=$1 ; shift |
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186 | paramfile_=$1 ; shift |
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187 | name_min=`echo $param_ | tr [A-Z] [a-z]` |
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188 | line_subroutine=`cat $paramfile_ | tr '[A-Z]' '[a-z]' | sed -n -e "/subrou.*${name_min}.*(/=" | head -1 ` |
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189 | tail -n +$line_subroutine $paramfile_ > tmp # file starting at the subroutine instruction |
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190 | line_return=`sed -n -e "/[Rr][Ee][Tt][Uu][Rr][Nn]/=" tmp | head -1` |
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191 | head -$line_return tmp > tmp2 # file containing the routine |
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192 | sed -e 's/\!.*$//' tmp2 > tmp3 |
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193 | cpp tmp2 > tmp3 2>/dev/null |
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194 | cat tmp3 | tr '[A-Z]' '[a-z]' > tmp2_cpp # same after cpp filtering |
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195 | last_line_declaration2="`sed -n -e 's/\!.*$//' -e 's/^/ /' -e '/[\ ,]real[\ ,]/p' -e '/[\ ,]integer[\ ,]/p' -e '/[\ ,]logical[\ ,]/p' -e '/[\ ,]character[\ ,]/p' tmp2_cpp | tail -1 | sed -e 's/ / /g' -e 's/ /.*/g'`" |
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196 | line_last_declaration=`cat tmp2 | tr '[A-Z]' '[a-z]' | sed -n -e "/$last_line_declaration2/="` |
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197 | if [ "$line_last_declaration" = "" ] ; then echo line_last_declaration $line_last_declaration line $last_line_declaration2 ; exit ; fi |
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198 | if (( $# > 0 )) ; then |
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199 | wtype=`echo $1 | awk ' { print $1 } '` |
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200 | case $wtype in |
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201 | -after_declarations) targeted_line=$line_last_declaration ;; |
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202 | -before_return) targeted_line=$line_return ;; |
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203 | -before_line|-after_line) linestr=`echo $1 | sed -e "s/$wtype //"` ; targeted_line=`sed -n -e "/$linestr/=" tmp2` ;; |
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204 | *) echo Cas non prevu 0 where=$where in inclide_file |
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205 | esac |
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206 | case $wtype in |
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207 | -after_declarations|-after_line) line0=$(( $line_subroutine - 1 )) ;; |
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208 | -before_return|-before_line) line0=$(( $line_subroutine - 2 )) ;; |
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209 | *) echo Cas non prevu 1 where=$where in inclide_file |
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210 | esac |
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211 | echo Including line $line0 in $paramfile_ the line : $line_to_be_included |
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212 | linebefore_include=$(( $line0 + $targeted_line )) |
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213 | sed -i'' -e $linebefore_include"s/$/\n $line_to_be_included \! $replay_comment/" $paramfile_ |
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214 | fi |
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215 | } |
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216 | |
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217 | |
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218 | |
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219 | |
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220 | #----------------------------------------------------------------------------- |
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221 | function block_Replay0() { |
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222 | #----------------------------------------------------------------------------- |
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223 | condition=$1 ; shift |
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224 | suf1=$1 ; shift |
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225 | suf2=$1 ; shift |
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226 | if [ $# -gt 0 ] ; then |
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227 | vars=$* |
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228 | echo ' if ('$condition') then' |
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229 | for var in $vars ; do echo ' '$var$suf1=$var$suf2 ; done |
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230 | echo ' endif' |
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231 | fi |
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232 | } |
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233 | |
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234 | #----------------------------------------------------------------------------- |
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235 | function iotd_calls(){ |
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236 | #----------------------------------------------------------------------------- |
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237 | klev_=$1 ; shift |
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238 | pre=$1 ; shift |
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239 | if (( $# >> 0 )) ; then |
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240 | vars=$* |
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241 | for var in $vars ; do |
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242 | echo "call iotd_ecrit_seq('"$pre$var"',$klev_,'"$pre$var in $param"',' ',"$var")" |
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243 | done |
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244 | fi |
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245 | } |
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246 | |
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247 | #----------------------------------------------------------------------------- |
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248 | function b_among_a() { |
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249 | #----------------------------------------------------------------------------- |
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250 | a="$1" |
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251 | b="$2" |
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252 | o="" |
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253 | for v in $a ; do |
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254 | for vv in $b ; do |
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255 | if [ "$v" = "$vv" ] ; then o="$o $v" ; fi |
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256 | done |
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257 | done |
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258 | echo $o |
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259 | } |
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260 | |
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261 | |
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262 | #----------------------------------------------------------------------------- |
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263 | # On nettoye les inclusions précédente dans les fichiers .F90 |
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264 | #----------------------------------------------------------------------------- |
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265 | |
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266 | if [ $nconly = false ] ; then |
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267 | for file in `grep "$replay_comment" *.F90 2> /dev/null | cut -d: -f1` ; do |
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268 | sed -i"" -e "/$replay_comment/d" $file |
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269 | done |
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270 | line=`sed -n -e "/CALL wake_ini/=" physiq_mod.F90 | head -1` |
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271 | sed -i"" -e "${line}s/$/\n CALL iophys_ini(pdtphys) ! $replay_comment ! $replay_comment/" physiq_mod.F90 |
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272 | fi |
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273 | |
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274 | #----------------------------------------------------------------------------- |
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275 | # Analysis of the variables to be stored and there nature |
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276 | #----------------------------------------------------------------------------- |
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277 | |
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278 | extract_subroutine $param $paramfile # -> input file |
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279 | varin0=`grep inten.*.in input | sed -e 's/\!.*$//' | cut -d: -f3 | sed -e 's/,/ /g'` |
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280 | varinout0=`grep inten.*.inout input | sed -e 's/\!.*$//' | cut -d: -f3 | sed -e 's/,/ /g'` |
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281 | varin=`echo $varin0 | sed -e 's/ /,/g' -e "s/,,,/,/g" -e "s/,,/,/g"` |
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282 | output=full # Attention, l'option full ne marche pas a cause de tableaux locaux undef |
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283 | nvar0D=0 ; nvar1D=0 ; nvar2D=0 |
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284 | case $output in |
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285 | light) search_str='real.*intent' ;; |
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286 | full) search_str='real' |
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287 | esac |
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288 | var_1D_inout=`grep -i "$search_str" input | grep intent.*inout | grep $klon | sed -e 's/!.*$//' -e /$klev/d | cut -d: -f3 | sed -e 's/,/ /g'` |
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289 | var_2D_inout=`grep -i "$search_str" input | grep intent.*inout | grep $klon | grep $klev | cut -d: -f3 | sed -e 's/!.*$//' -e 's/,/ /g'` |
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290 | var_1D_noarg=`grep -i "$search_str" input | sed -e /intent/d | grep $klon | sed -e 's/!.*$//' -e /$klev/d | cut -d: -f3 | sed -e 's/,/ /g'` |
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291 | var_2D_noarg=`grep -i "$search_str" input | sed -e /intent/d | grep $klon | grep $klev | cut -d: -f3 | sed -e 's/!.*$//' -e 's/,/ /g'` |
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292 | var_1D=`grep -i "$search_str" input | grep $klon | sed -e 's/!.*$//' -e /$klev/d | cut -d: -f3 | sed -e 's/,/ /g'` |
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293 | var_2D=`grep -i "$search_str" input | grep $klon | grep $klev | cut -d: -f3 | sed -e 's/!.*$//' -e 's/,/ /g'` |
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294 | if [ "$ncvars" != "" ] ; then |
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295 | var_1D=`b_among_a "$var_1D" "$ncvars"` |
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296 | var_2D=`b_among_a "$var_2D" "$ncvars"` |
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297 | fi |
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298 | echo Variables in and inout : $varin0 |
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299 | echo 1D variables "(all)" : $var_1D |
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300 | echo 2D variables "(all)" : $var_2D |
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301 | echo 1D variables "intent(inout)" : $var_1D_inout |
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302 | echo 2D variables "intent(inout)" : $var_2D_inout |
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303 | echo local 1D variables : $var_1D_noarg |
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304 | echo local 2D variables : $var_2D_noarg |
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305 | |
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306 | #----------------------------------------------------------------------------- |
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307 | # Ecriture de la routine d'appel a la parametrisation en mode replay |
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308 | #----------------------------------------------------------------------------- |
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309 | |
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310 | if [ $nconly = false ] ; then |
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311 | |
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312 | cat > call_param_replay <<eod |
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313 | subroutine call_param_replay($klon,$klev) |
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314 | USE IOIPSL, ONLY : getin |
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315 | IMPLICIT NONE |
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316 | integer :: ifin,irec,it,rec_length_replay=0,replay_irec0=1,replay_nt=1000 |
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317 | eod |
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318 | grep 'intent.*::' input | sed -e 's/ //g' -e 's/,intent(.*[nt])//'>> call_param_replay |
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319 | # duplicating declaration for inout variables |
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320 | |
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321 | for var in $varinout0 ; do |
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322 | sed -e 's/::/ :: /' -e 's/,/ , /g' -e 's/$/ /' input | grep 'intent.*inout.*::.* '$var' ' | sed -e 's/ //g' -e 's/,intent(.*[nt])//' | sed -e 's/::.*$/, allocatable, save :: '$var'_Replay0/' | sed -e 's/'$klon'/:/' -e 's/'$klev'/:/' >> call_param_replay |
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323 | done |
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324 | # Initalisation, shared with dump_param1.sh |
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325 | dump_param_open "in" $varin0 >> call_param_replay |
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326 | for var in $varinout0 ; do |
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327 | sed -e 's/::/ :: /' -e 's/,/ , /g' -e 's/$/ /' input | grep 'intent.*inout.*::.* '$var' ' | sed -e 's/intent(.*t)//' -e 's/^.*(/allocate('$var'_Replay0(/' -e 's/).*$/))/' >> call_param_replay |
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328 | done |
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329 | |
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330 | cat >> call_param_replay <<eod |
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331 | call getin('replay_nt',replay_nt) |
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332 | call getin('replay_irec0',replay_irec0) |
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333 | do it=1,replay_nt |
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334 | if (replay_irec0>=0) then |
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335 | irec=replay_irec0+it-1 |
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336 | else |
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337 | irec=-replay_irec0 |
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338 | endif |
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339 | print*,'Time step',it,', reading record',irec,'in dump_param.bin' |
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340 | read(82,rec=irec,iostat=ifin) $varin |
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341 | if (.NOT. ifin == 0 ) stop "Fin du fichier fort.82" |
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342 | eod |
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343 | |
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344 | block_Replay0 "it == 1" _Replay0 "" $varinout0 >> call_param_replay |
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345 | block_Replay0 "replay_irec0 < 0" "" _Replay0 $varinout0 >> call_param_replay |
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346 | get_subroutine_arg $param $paramfile | sed -e 's/subroutine/ call/' >> call_param_replay |
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347 | block_Replay0 "replay_irec0 < 0" _Replay0 "" $varinout0 >> call_param_replay |
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348 | cat >> call_param_replay <<eod |
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349 | enddo |
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350 | return |
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351 | end |
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352 | eod |
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353 | |
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354 | fi # nconly = false |
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355 | |
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356 | #----------------------------------------------------------------------------- |
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357 | # Creating file dump_${param}_head.h |
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358 | #----------------------------------------------------------------------------- |
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359 | |
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360 | if [ $nconly = false ] ; then |
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361 | \rm $paraminc1 |
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362 | cat> $paraminc1 <<eod |
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363 | logical, save :: first_replay=.true. |
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364 | integer, save :: rec_length_replay=0,irec=0 |
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365 | if (first_replay) then |
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366 | eod |
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367 | dump_param_open out $varin0 >> $paraminc1 |
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368 | cat>> $paraminc1 <<eod |
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369 | first_replay=.false. |
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370 | endif |
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371 | irec=irec+1 |
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372 | write(81,rec=irec) $varin |
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373 | eod |
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374 | iotd_calls 1 in_${prefix} $var_1D_inout >> $paraminc1 |
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375 | iotd_calls $klev in_${prefix} $var_2D_inout >> $paraminc1 |
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376 | fi # nconly = false |
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377 | |
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378 | if [ "`grep $paraminc1 $paramfile`" = "" ] ; then |
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379 | # Not changing $paraminc1 if it is already included in the file |
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380 | # To allow adding new nc outputs in a routine equiped for replay |
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381 | for var in $var_1D_noarg $var_2D_noarg ; do echo $var=0. >> $paraminc1 ; done |
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382 | include_line "include \"$paraminc1\"" $param $paramfile -after_declarations |
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383 | fi |
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384 | |
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385 | #----------------------------------------------------------------------------- |
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386 | # Creating file dump_${param}_nc_${prefix}.h |
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387 | #----------------------------------------------------------------------------- |
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388 | |
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389 | \rm $paraminc2 |
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390 | iotd_calls 1 "${prefix}" $var_1D >> $paraminc2 |
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391 | iotd_calls $klev "${prefix}" $var_2D >> $paraminc2 |
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392 | include_line "include \"$paraminc2\"" $param $paramfile "$where" |
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393 | |
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394 | #----------------------------------------------------------------------------- |
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395 | # dump_ini_module gere l'ecriture des variables d'interface de l'intialisation |
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396 | # du module en mode replay |
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397 | #----------------------------------------------------------------------------- |
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398 | |
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399 | if [ $nconly = false -a $paramini != None ] ; then |
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400 | varinmod=`grep -i 'intent.in' $inimod.F90 | sed -e 's/\!.*$//' | cut -d: -f3 | sed -e 's/,/ /g'` |
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401 | varinmodv=`echo $varinmod | sed -e 's/ /,/g'` |
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402 | cat > $iniinc <<...eod............................................... |
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403 | open(90,file='$inimod.bin',form='unformatted') |
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404 | write(90) $varinmodv |
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405 | close(90) |
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406 | ...eod............................................... |
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407 | include_line "include \"$iniinc\"" $paramini $inimod.F90 -before_return |
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408 | fi # nconly = false |
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409 | |
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410 | |
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411 | #----------------------------------------------------------------------------- |
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412 | # get_ini_module gere l'initialisation du module en mode replay |
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413 | #----------------------------------------------------------------------------- |
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414 | if [ $nconly = false -a $paramini != None ] ; then |
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415 | cat > get_ini_module <<....eod............................................ |
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416 | subroutine get_ini_module |
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417 | use $inimod |
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418 | IMPLICIT NONE |
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419 | ....eod............................................ |
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420 | grep -i intent.in $inimod.F90 | tr '[A-Z]' '[a-z]' | sed -e 's/,.*intent.i.*)//' >> get_ini_module |
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421 | cat >> get_ini_module <<....eod........................................... |
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422 | open(90,file='$inimod.bin',form='unformatted') |
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423 | read(90) $varinmodv |
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424 | close(90) |
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425 | ....eod........................................... |
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426 | #get_subroutine_arg $paramini $inimod.F90 ; exit |
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427 | get_subroutine_arg $paramini $inimod.F90 | sed -e 's/subroutine/call/' >> get_ini_module |
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428 | cat >> get_ini_module <<....eod........................................... |
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429 | return |
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430 | end |
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431 | ....eod........................................... |
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432 | fi # nconly = false |
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433 | |
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434 | #----------------------------------------------------------------------------- |
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435 | # Inclusion de l'ecriture de l'interface de l'initialisation |
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436 | #----------------------------------------------------------------------------- |
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437 | |
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438 | if [ $nconly = false ] ; then |
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439 | for file in get_ini_module call_param_replay ; do sed -i'' -e "s/$/ \!$replay_comment/" $file ; done |
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440 | cat get_ini_module >> $inimod.F90 |
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441 | cat call_param_replay >> $paramfile |
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442 | fi |
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443 | |
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444 | #\rm -f tmp input |
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