Last change
on this file since 4955 was
4955,
checked in by abarral, 5 weeks ago
|
(WIP) continue refactoring setup.sh
|
File size:
1.3 KB
|
Rev | Line | |
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[4615] | 1 | #!/bin/bash |
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| 2 | |
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| 3 | # ./reb $type $ym $SIM $SIMUDIR |
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| 4 | |
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| 5 | ym=$1 |
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| 6 | SIMUDIR=$2 |
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[4955] | 7 | SIM=$(basename "$SIMUDIR"); shift 2 |
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[4615] | 8 | types="$*" |
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[4955] | 9 | PUT="mv" |
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[4615] | 10 | rebuild=/gpfswork/rech/groupe/rgroupe027/LMDZ20191008.trunkOR3013/modipsl/bin/rebuild |
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[4955] | 11 | local=$(pwd) |
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[4615] | 12 | |
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[4955] | 13 | . lmdz_env.sh |
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[4615] | 14 | |
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[4955] | 15 | echo "type $type" |
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| 16 | echo "ym $ym" |
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| 17 | echo "SIM $SIM" |
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| 18 | echo "SIMUDIR $SIMUDIR" |
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[4615] | 19 | |
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[4955] | 20 | for type in $types; do |
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| 21 | job=$SIM$type |
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[4615] | 22 | |
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[4955] | 23 | cat <<eod >| $job |
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| 24 | #!/bin/bash |
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| 25 | ## Headers managed by sed |
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| 26 | #@JZ#JeanZay |
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| 27 | #@JZ#SBATCH -A @@groupe@cpu |
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| 28 | #@JZ#SBATCH --job-name=Seq # nom du job |
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| 29 | #@JZ#SBATCH --nodes=1 # nombre de noeuds |
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| 30 | #@JZ#SBATCH --ntasks-per-node=1 # nombre de taches MPI par noeud |
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| 31 | #@JZ#SBATCH --time=00:30:00 # temps d execution maximum demande (HH:MM:SS) |
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| 32 | #@JZ#SBATCH --output=post${type}%j.out # nom du fichier de sortie |
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| 33 | #@JZ#SBATCH --error=post${type}%j.out # nom du fichier d'erreur (ici en commun avec la sortie) |
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[4615] | 34 | |
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| 35 | # on se place dans le repertoire de soumission |
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| 36 | cd $local |
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| 37 | pwd |
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| 38 | |
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| 39 | . lmdz_env.sh |
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| 40 | |
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| 41 | ulimit -s unlimited |
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[4955] | 42 | if [[ -f ${type}_0000.nc ]]; then |
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| 43 | $rebuild -o ${type}.$ym.nc ${type}_[0-9][0-9][0-9][0-9].nc |
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| 44 | else |
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| 45 | echo "${type}_0000.nc absent" |
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| 46 | fi |
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| 47 | if [[ -f $type.$ym.nc ]]; then |
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| 48 | ${PUT} $type.$ym.nc ${SIMUDIR}/$type.$ym.nc |
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| 49 | rm -f ${type}_[0-9][0-9][0-9][0-9].nc |
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| 50 | else |
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| 51 | echo "La reconstruction de $type.$ym.nc a echoué" |
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| 52 | fi |
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[4615] | 53 | eod |
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| 54 | |
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[4955] | 55 | echo "Submitting the rebuild job $job" |
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| 56 | sbatch "$job" |
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[4615] | 57 | done |
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