Changeset 4239 for dynamico_lmdz


Ignore:
Timestamp:
May 21, 2020, 2:21:40 AM (5 years ago)
Author:
dubos
Message:

simple_physics : physics output with DYNAMICO, tested on Camelot

Location:
dynamico_lmdz/simple_physics/config/DYNAMICO
Files:
8 added
8 edited

Legend:

Unmodified
Added
Removed

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/context_dynamico.xml

    r4232 r4239  
    1111  <!-- Definition of all existing variables in field_def_dynamico.xml                                              -->
    1212  <!-- =========================================================================================================== -->
     13  <field_definition src="./field_def_physics.xml" />
    1314  <field_definition src="./field_def_dynamico.xml" />
    1415
    … …  
    1617  <!-- Definition of output files in file_def_dynamico.xml, not including restart files                            -->
    1718  <!-- =========================================================================================================== -->
     19  <file_definition src="./file_def_physics.xml" /> 
    1820  <file_definition src="./file_def_dynamico.xml" /> 
    1921

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/field_def_dynamico.xml

    r4232 r4239  
    77 
    88  <field_group id="standard_output">
     9
     10    <field_group group_ref="phyparam_output"/>
    911   
    1012    <field id="timestep" grid_ref="scalar" unit="s"/>

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/file_def_dynamico.xml

    r4232 r4239  
    55<file_definition >
    66
    7   <file id="output_dcmip2016_native" convention="CF" enabled="false" output_freq="3h" sync_freq="3h" output_level="10" timeseries="none" description="Dry baroclinic wave" >
     7  <file id="dynamico_native" convention="CF" enabled="false" output_freq="3h" sync_freq="3h" output_level="10" timeseries="none" description="Simple physics" >
    88   
    99    <field_group id="dcmip2016_output_field_once" operation="once" freq_offset="0ts" ts_enabled="true">
    … …  
    2020      <field field_ref="ps" name="PS"       standard_name="surface_pressure" long_name="Surface pressure"         unit="Pa" />
    2121      <field field_ref="phis" operation="once" freq_offset="0ts" name="PHIS"   standard_name="surface_geopotential" long_name="Surface geopotential" unit="m2/m2"/>
     22
     23<!--     
    2224      <field field_ref="geopot"  name="PHI"   standard_name="geopotential" long_name="geopotential" unit="m2/s2"/>
    23       <field field_ref="ulon" name="U"      standard_name="eastward_wind" long_name="Zonal wind"                  unit="m/s"/>
    24       <field field_ref="ulat" name="V"      standard_name="northward_wind" long_name="Meridional wind"            unit="m/s"/>
    2525      <field field_ref="uz" name="W"        standard_name="upward_air_velocity" long_name="Vertical velocity"     unit="m/s"/>
    2626      <field field_ref="omega" name="OMEGA"        standard_name="lagrangian_tendency_of_air_pressure" long_name="Vertical pressure velocity"     unit="Pa/s"/>
    2727      <field field_ref="p"  name="P"        standard_name="air_pressure" long_name="Pressure"     unit="Pa"/>
     28      <field field_ref="w850" name="W850"       long_name="Vertical velocity at 850 hPa"     unit="m/s"/>
     29      <field field_ref="w500" name="W500"       long_name="Vertical velocity at 500 hPa"     unit="m/s"/>
     30-->
     31      <field field_ref="ulon" name="U"      standard_name="eastward_wind" long_name="Zonal wind"                  unit="m/s"/>
     32      <field field_ref="ulat" name="V"      standard_name="northward_wind" long_name="Meridional wind"            unit="m/s"/>
    2833      <field field_ref="temp"  name="T"        standard_name="air_temperature" long_name="Temperature"     unit="K"/>
    29 <!--
    30       <field field_ref="q1"  name="Q"        standard_name="specific_humidity"  long_name="Specific humidity"          unit="kg/kg"/>
    31       <field field_ref="q2"  name="Qc"                                          long_name="Cloud water mixing ration"  unit="kg/kg"/>
    32       <field field_ref="q3"  name="Qr"                                          long_name="Rain water mixing ration"  unit="kg/kg"/>
    33 -->
    34       <field field_ref="precl"  name="PRECT"     standard_name="rainfall_rate"  long_name="Large Scale precipitation rate"  unit="m/s"/>
    35 <!--
    36       <field field_ref="q4"  name="Q1"      long_name="Single chlorine mixing ratio"  unit="kg/kg"/>
    37       <field field_ref="q5"  name="Q2"      long_name="Chlorine gas mixing ratio"  unit="kg/kg"/>
    38 -->
    39       <field field_ref="Q1_col_int"  name="Q1_col_int"      long_name="Single chlorine column integrated mixing ratio"  unit="kg/m2"/>
    40       <field field_ref="Q2_col_int"  name="Q2_col_int"      long_name="Chlorine gas column integrated mixing ratio"  unit="kg/m2"/>
     34
    4135      <field field_ref="u850" name="U850"       long_name="Zonal wind at 850 hPa"      unit="m/s"/>
    4236      <field field_ref="v850" name="V850"       long_name="Meridional wind at 850 hPa"   unit="m/s"/>
    43       <field field_ref="w850" name="W850"       long_name="Vertical velocity at 850 hPa"     unit="m/s"/>
    4437      <field field_ref="t850" name="T850"       long_name="Temperature at 850 hPa"   unit="K"/>
    4538      <field field_ref="omega850" name="OMEGA850"   long_name="Vertical pressure velocity at 850 hPa"     unit="Pa/s"/>
    4639      <field field_ref="u500" name="U500"       long_name="Zonal wind at 500 hPa"      unit="m/s"/>
    4740      <field field_ref="v500" name="V500"       long_name="Meridional wind at 850 hPa"   unit="m/s"/>
    48       <field field_ref="w850" name="W500"       long_name="Vertical velocity at 500 hPa"     unit="m/s"/>
    4941      <field field_ref="t500" name="T500"       long_name="Temperature at 850 hPa"   unit="K"/>
    5042      <field field_ref="omega500" name="OMEGA500"   long_name="Vertical pressure velocity at 500 hPa"     unit="Pa/s"/>
    51       <field field_ref="SST" name="SST"       long_name="Sea surface temperature"   unit="K"/>
    5243     
    5344    </field_group>
    5445
    5546    <variable name="model" type="string" > dynamico </variable>
    56     <variable name="test_case" type="string" > 161_dry </variable>
    57     <variable name="horizontal_resolution" type="string" > 1 degree native (grid points : 80x80x10) </variable>
    58     <variable name="levels" type="string" > L30 </variable>
    5947    <variable name="grid" type="string" > hex </variable>
    6048    <variable name="equation" type="string" > hydro </variable>
    61     <variable name="time_frequency" type="string" > 3hr </variable>   
    6249
    6350  </file>
    6451
    6552
    66   <file id="output_dcmip2016_regular" enabled="true" output_freq="3h" sync_freq="3h" output_level="10" description="Dry baroclinic wave" timeseries="none" >
     53  <file id="dynamico_regular" enabled="true" output_freq="24h" sync_freq="24h" output_level="10" description="Simple physics" timeseries="none" >
    6754   
    6855    <field_group group_ref="dcmip2016_output_field_once"/>
    … …  
    7158
    7259    <variable name="model" type="string" > dynamico </variable>
    73     <variable name="test_case" type="string" > 161_dry </variable>
    74     <variable name="horizontal_resolution" type="string" > 1 degree interpolated (grid points : 80x80x10) </variable>
    75     <variable name="levels" type="string" > L30 </variable>
    7660    <variable name="grid" type="string" > hex </variable>
    7761    <variable name="equation" type="string" > hydro </variable>
    78     <variable name="time_frequency" type="string" > 3hr </variable>   
    7962
    8063  </file>
    8164
    82 
    8365</file_definition>

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/iodef.xml

    r4232 r4239  
    1212
    1313                <variable_group id="parameters" >
    14                    <variable id="info_level" type="int">100</variable>
     14                   <variable id="info_level" type="int">1</variable>
    1515                   <variable id="using_server" type="bool">false</variable>
    1616                </variable_group>

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/job_CICLAD.sh

    r4232 r4239  
    33#PBS -q std
    44#PBS -n
    5 #PBS -l nodes=1:ppn=40
    6 #PBS -l walltime=00:15:00
     5#PBS -l nodes=1:ppn=60
     6#PBS -l walltime=01:00:00
    77#PBS -l mem=120gb
    88#PBS -l vmem=120gb
    … …  
    4242module load hdf5/1.8.18-parallel-ifort
    4343module load netcdf4/4.4.1.1-parallel-ifort
     44module list
    4445
    4546rm -rf gcm.log logs *.nc netcdf
     47ls -lrth
     48which mpirun
    4649mpirun -np 40 -cpus-per-proc $OMP_NUM_THREADS -bycore -bind-to-core -report-bindings ./gcm.exe > gcm.log 2>&1
    4750date >> gcm.log

  • dynamico_lmdz/simple_physics/config/DYNAMICO/TEST/run.def

    r4232 r4239  
    1010
    1111#-------------- Mesh ----------------
    12 nbp=21
     12nbp=41
    1313optim_it=500
    1414nsplit_i=2
    15 nsplit_j=2
     15nsplit_j=3
    1616llm=30
    1717omp_level_size=1
    18 disvert=ncarl30
     18#disvert=ncarl30
     19disvert=std
    1920
    2021#------------ Numerics --------------
    … …  
    3435itau_physics=1
    3536physics=plugin
     37# 0.25 day = 6h
     38period_sort=0.25
     39diurnal=.TRUE.
    3640
    3741#---------------- Run ---------------
    3842run_length=2592000
     43# 21600s = 6h
    3944write_period=21600
    4045
    … …  
    4247#write_period=480
    4348
    44 etat0=dcmip4
    45 dcmip4_testcase=1
     49#etat0=dcmip4
     50#dcmip4_testcase=1
     51etat0=isothermal
    4652
    4753#------------ Diagnostics -----------

  • dynamico_lmdz/simple_physics/config/DYNAMICO/install_DYNAMICO.sh

    r4231 r4239  
    1010cd modeles
    1111svn co "svn+ssh://${USER}@forge.ipsl.jussieu.fr/ipsl/forge/projets/ioserver/svn/XIOS/trunk" -r 1659 XIOS
     12cp -pr patch/XIOS/arch/* modeles/XIOS/arch/
     13
    1214svn co "svn+ssh://${USER}@forge.ipsl.jussieu.fr/ipsl/forge/projets/dynamico/svn/codes/icosagcm/devel" DYNAMICO

  • dynamico_lmdz/simple_physics/config/DYNAMICO/modeles/DYNAMICO_phyparam/bld.cfg

    r4231 r4239  
    3838bld::excl_dep        use::time_mod
    3939bld::excl_dep        use::mpipara
     40bld::excl_dep        use::output_field_mod
    4041bld::excl_dep        use::physics_mod
    4142bld::excl_dep        use::physics_interface_mod
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