Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/field_def.xml
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/field_def.xml (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/field_def.xml (revision 4152)
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Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/filedef_dcmip2016.xml
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/filedef_dcmip2016.xml (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/filedef_dcmip2016.xml (revision 4152)
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+ dynamico
+ DCMIP41
+ native (grid points : 80x80x10)
+ L10
+ hex
+ hydro
+ 24h
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+ DCMIP41
+ two_degree interpolated (grid points : 80 x 80 x 10)
+ L30
+ hex
+ hydro
+ 24h
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Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/icosa.xml
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/icosa.xml (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/icosa.xml (revision 4152)
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Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/iodef.xml
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/iodef.xml (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/iodef.xml (revision 4152)
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+ true
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+ 1000000
+ 4
+ 500
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+ false
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Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/job.sh
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/job.sh (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/job.sh (revision 4152)
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+#!/bin/bash
+#PBS -N NUDG_mpi_omp
+#PBS -q day
+#PBS -n
+#PBS -l nodes=1:ppn=40
+#PBS -l walltime=20:30:00
+#PBS -l mem=120gb
+#PBS -l vmem=120gb
+
+#####comment:PBS -l mem=31922327552,ncpus=60
+#Jobs start in the HOME directory, cd to submitted directory
+cd "$PBS_O_WORKDIR"
+
+############################################################
+NCPU=$(wc -l < $PBS_NODEFILE)
+awk "NR % 4 == 0" $PBS_NODEFILE | head -n 40 > nodelist.txt
+
+echo ------------------JOB SUMMARY--------------------------
+echo 'PBS OUT: Job allocated on: '${NCPU}' cpu(s)'
+echo 'PBS OUT: Job running on the following node(s): '
+cat nodelist.txt
+echo -------------------------------------------------------
+echo PBS OUT: Job running on: $PBS_O_HOST
+echo PBS OUT: Originating queue: $PBS_O_QUEUE
+echo PBS OUT: Executing queue: $PBS_QUEUE
+echo PBS OUT: Work directory: $PBS_O_WORKDIR
+echo PBS OUT: Execution mode: $PBS_ENVIRONMENT
+echo PBS OUT: Job identifier: $PBS_JOBID
+echo PBS OUT: Job name: $PBS_JOBNAME
+echo PBS OUT: Node file: $PBS_NODEFILE
+echo PBS OUT: Current home directory: $PBS_O_HOME
+echo PBS OUT: PATH= $PBS_O_PATH
+echo -------------------------------------------------------
+
+
+export OMP_NUM_THREADS=1
+export OMP_STACKSIZE=128M
+ulimit -s unlimited
+
+module purge
+module load gnu/4.9.3
+module load intel/15.0.6.233
+module load openmpi/1.6.5-ifort
+module load hdf5/1.8.18-parallel-ifort
+module load netcdf4/4.4.1.1-parallel-ifort
+
+rm -rf gcm.log logs *.nc netcdf
+ln -sf ../../Data/*.nc .
+ln -sf ../../build/bin/icosa_gcm.exe gcm.exe
+
+mpirun -np 40 -cpus-per-proc $OMP_NUM_THREADS -bycore -bind-to-core -report-bindings ./gcm.exe >> gcm.log
+#gdb ./gcm.exe >> gcm.log
+date >> gcm.log
+
+mkdir -p netcdf
+cp gcm.log *.def netcdf
+mv *.nc netcdf
+
+mkdir -p logs
+cp *.xml logs
+#cp -pr /mnt/homedafs-2.5/lov/homedata/jsethunadh/testing/build_mpi_omp/bin/icosa_gcm.exe logs
+#cp -pr /mnt/homedafs-2.5/lov/homedata/jsethunadh/testing/DYNAMICO_devel/src logs
+mv xios_client_*.err xios_client_*.out gcm.log logs
+
+
Index: dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/run.def
===================================================================
--- dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/run.def (revision 4152)
+++ dynamico_lmdz/guided/Experiments/NUDG_DYNAMICO/run.def (revision 4152)
@@ -0,0 +1,48 @@
+grid_type = icosahedral
+
+#------------- Planet ---------------
+radius=6.37122e6
+omega=7.292e-5
+g=9.80616
+cpp=1004.5
+kappa=0.2857143
+preff=1e5
+#------------- Nudging ------------
+guided_type=nudging
+guided_nudging_field=wind
+nudging_center_lat=90.
+#nudging_radius=1.5e7
+nudging_radius=0.
+nudging_relaxation_time=21600.
+#nudging_time=86400
+nudging_time=86400
+dcmip4_up0=0
+#------------- Dynamics ------------
+#-------------- Mesh ----------------
+#nbp=80
+nbp=40
+nsplit_i=2
+nsplit_j=2
+optim_it=500
+llm=30
+disvert=ncarl30
+#------------ Numerics --------------
+dt=300
+nqtot=2
+itau_adv=3
+#----------- Dissipation ------------
+nitergdiv=2
+tau_graddiv=10000
+nitergrot=2
+tau_gradrot=10000
+niterdivgrad=2
+tau_divgrad=10000
+#-------------- Physics -------------
+#---------------- Run ---------------
+run_length=5184000
+#write_period=3600
+write_period=300
+etat0=dcmip4
+dcmip4_testcase=1
+#------------ Diagnostics -----------
+diagflux=.TRUE.