Changeset 4111 for dynamico_lmdz

Timestamp:

Jun 8, 2018, 1:09:39 PM (7 years ago)

Author:

dubos

Message:

aquaplanet : scripts ported to Irene

Location:

dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5

Files:

• example.sh (modified) (2 diffs)
• prepare.sh (modified) (3 diffs)

dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5/example.sh

@@ -50 +50 @@
 }
 
-function submit_X64_CURIE()
+function submit_CCC()
 {
     EXP=$1 ; shift
@@ -59 +59 @@
     DEP="-a $JOBID"
 }
+
+function submit_X64_CURIE()
+{
+    submit_CCC $*
+}
+
+function submit_X64_IRENE()
+{
+    submit_CCC $*
+}    
 
 function cmd_submit()

dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5/prepare.sh

@@ -102 +102 @@
 cd ${MYDIR}
 rm -rf gcm.log *.nc xios_*.err xios_*.out gcm.log logs
+ln -s dynamico.0000.out gcm.log
 
 symlink() { if [ -e \$1 ] ; then ln -s \$1 \$2 ; fi ; }
 
-for x in ../FILES_LMDZ/*.nc ; do ln -s \$x . ; done
+for x in \$(ls ../FILES_LMDZ/*.nc) ; do ln -s \$x . ; done
 
 cat <<END  > killme.sh
@@ -207 +208 @@
 export OMP_NUM_THREADS=1
 ccc_mprun -f mpmd.conf
+
 $( epilogue_$1 )
 $( epilogue_all )
@@ -223 +225 @@
 $ICOSA_LMDZ >> \${GCM}.out 2>\${GCM}.err
 date >> \${GCM}.out
+EOF
+chmod a+x $MYDIR/gcm.sh
+}
+
+#------------ Batch jobs : machine-dependent main script : X64_IRENE  --------------
+
+function batch_X64_IRENE_ce0l() {
+batch_X64_IRENE ce0l $WALLTIME_CE0L
+}
+
+function batch_X64_IRENE_first() {
+batch_X64_IRENE first $WALLTIME_JOB
+}
+
+function batch_X64_IRENE_next() {
+batch_X64_IRENE next $WALLTIME_JOB
+}
+
+function batch_X64_IRENE() { # $1 = first or next $2 = walltime
+NB_MPI_TOTAL=$(( $NB_MPI_DYNAMICO + $NB_MPI_XIOS ))
+cat <<EOF
+#!/bin/bash
+## Request name
+#MSUB -r ${EXPERIMENT}_$1_mpi
+#MSUB -q skylake
+#MSUB -A gch0316
+#MSUB -m work,scratch
+#MSUB -x
+## Number of tasks (=MPI processes) to use
+#MSUB -n $NB_MPI_TOTAL
+## Elapsed time limit in seconds
+#MSUB -T $2
+
+$( prologue_all )
+module load ipm
+export IPM_REPORT=full
+$( prologue_$1 )
+export OMP_NUM_THREADS=1
+ccc_mprun -f mpmd.conf
+awk '/IPMv2/{y=1;next}y' gcm.log
+grep MAIN gcm.log
+$( epilogue_$1 )
+$( epilogue_all )
+EOF
+
+cat <<EOF > $MYDIR/mpmd.conf
+$NB_MPI_DYNAMICO ./gcm.sh
+$NB_MPI_XIOS $XIOS_SERVER
+EOF
+
+cat <<EOF > $MYDIR/gcm.sh
+#!/bin/bash
+
+function run()
+{
+    hostname
+    ldd $ICOSA_LMDZ
+    $ICOSA_LMDZ
+}
+
+function run_print_each()
+{
+    GCM=\$(printf 'dynamico.%04d' \$ME)
+    date > \${GCM}.out
+    run >> \${GCM}.out 2>\${GCM}.err
+    date >> \${GCM}.out
+}
+
+function run_print_master()
+{
+    if ((\$ME>0)) ; then
+        run > /dev/null 2>&1
+    else
+        run_print_each
+    fi
+}
+
+ME=\${BRIDGE_MPRUN_RANKID}
+
+run_print_master
+#run_print_each
 EOF
 chmod a+x $MYDIR/gcm.sh