Changeset 3375 for BOL

Timestamp:

Jul 18, 2018, 11:33:58 AM (6 years ago)

Author:

fhourdin

Message:

Commit recent updates in the install_lmdz.sh script

File:

• BOL/script_install/install_lmdz.sh (modified) (17 diffs)

BOL/script_install/install_lmdz.sh

@@ -48 +48 @@
     \cp -f -p ~/LMDZ/pub/$1 .
   else
-    wget http://www.lmd.jussieu.fr/~lmdz/pub/$1
+    wget -nv http://www.lmd.jussieu.fr/~lmdz/pub/$1
     #dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir ; cp -r `basename $1` $dir
   fi
@@ -73 +73 @@
 ioipsl=1
 veget=1
+orchidee_rev=""  # ORCHIDEE revision (empty means use the provided version)
 bench=1
 pclinux=1
+pcmac=0 # default: not on a Mac
 compiler=gfortran
 SCM=0
@@ -95 +97 @@
 with_xios="n"
 opt_makelmdz_xios=""
+## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
+compile_with_fcm=1
+cosp=0 ; opt_cosp=""
+
+# Check if on a Mac
+if [ `uname` = "Darwin" ]
+then
+    pcmac=1
+    export MAKE=make
+fi
+#echo "pcmac="$pcmac
 
 #########################################################################
@@ -133 +146 @@
 
     -gprof     to compile with -pg to enable profiling with gprof
+
+    -orchidee_rev "svn_release" : upgrade included ORCHIDEE model to
+               given svn release number (ORCHIDEE svn password required!)
+               (only valid for orchidee2.0 and later)
+
+    -cosp      to compile with cosp
+
+    -nofcm     to compile without fcm
 
     -SCM        install 1D version automatically
@@ -148 +169 @@
      "-d") grid_resolution=$2 ; shift ; shift ;;
      "-gprof") OPT_GPROF="-pg" ; shift ;;
+     "-cosp") cosp=1 ; opt_cosp="-cosp true" ; shift ;;
+     "-orchidee_rev") orchidee_rev=$2 ; shift ; shift ;;
+     "-nofcm") compile_with_fcm=0 ; shift ;;
      "-SCM") SCM=1 ; shift ;;
      "-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;;
@@ -169 +193 @@
 
 
-## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
-compile_with_fcm=1
 arch=local
 
@@ -189 +211 @@
             o_ins_make="-t ada" ;
             make=gmake ;
-#            module load intel/2013.0 ;
+            module load intel/2013.0 ;
             arch=X64_ADA ;;
 
-   cicla)   compiler="gfortran" ;
+   cicla|camel)   compiler="gfortran" ;
             if [ $parallel != none ] ; then
-              module load openmpi/1.4.5-gfortran ;
+              module load openmpi/1.6.5-gfortran ;
               root_mpi=$MPI_HOME ;
               path_mpi=$root_mpi/bin ;
@@ -212 +234 @@
                 fi
             # For Scientifique Linux with gfortran at LMD :
-            elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 -a compiler = "gfortran" ] ; then
+            elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 -a $compiler = "gfortran" ] ; then
                 path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin ;
                 root_mpi=/usr/lib64/openmpi/1.4.5-gfortran ;
                 export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH
             # For Scientifique Linux with ifort at LMD :
-            elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a compiler = "ifort" ] ; then
+            elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "ifort" ] ; then
                 path_mpi=/usr/lib64/openmpi/1.4.5-ifort/bin ;
                 root_mpi=/usr/lib64/openmpi/1.4.5-ifort ;
                 export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH
             # For Scientifique Linux with pgf90 at LMD :
-            elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a compiler = "pgf90" ] ; then
+            elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "pgf90" ] ; then
                 path_mpi=/usr/lib64/openmpi/1.4.5-pgf/bin ;
                 root_mpi=/usr/lib64/openmpi/1.4.5-pgf ;
@@ -363 +385 @@
    export CXX=icpc
    export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
+   export fpp_flags="-P -traditional"
    compile_with_fcm=1
 
@@ -537 +560 @@
   tmp >| AA_make.gdef
 
+  if [ $pcmac == 1 ]
+  then
+      cp AA_make.gdef tmp
+      sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef
+  fi
+  
 
 # We use lines for g95 even for the other compilers to run ins_make
@@ -546 +575 @@
         \cp -f ~rdzt401/bin/AA_make.gdef .
     fi
+    
     chmod u=rwx ins_make.bash
     ./ins_make.bash $o_ins_make
@@ -625 +655 @@
   echo '##########################################################'
   cd $MODEL/modipsl/modeles
+  xioslog=`pwd`/xios.log
+  echo "log file: $xioslog"
   #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash
   myget import/install_xios.bash
   chmod u=rwx install_xios.bash
-  ./install_xios.bash -prefix $MODEL/modipsl/modeles \
+  if [ ${hostname:0:5} = ada33 ] ; then
+    ./install_xios.bash \
+    -prefix /workgpfs/rech/gzi/rgzi027/LMDZ20180221.trunk/modipsl/modeles \
+    -netcdf /smplocal/pub/NetCDF/4.1.3/mpi -hdf5 /smplocal/pub/HDF5/1.8.9/par \
+    -MPI /smplocal/intel/compilers_and_libraries_2017.2.174/linux/mpi/intel64/ \
+    -arch X64_ADA > xios.log 2>&1
+   else
+     ./install_xios.bash -prefix $MODEL/modipsl/modeles \
                       -netcdf ${ncdfdir} -hdf5 ${ncdfdir} \
-                      -MPI $root_mpi -arch $arch
+                      -MPI $root_mpi -arch $arch > xios.log 2>&1
+   fi
+   if [ -f XIOS/lib/libxios.a ] ; then
+     echo "OK, XIOS library successfully generated"
+   fi
 fi
 
@@ -644 +687 @@
   export ORCHPATH=`pwd`
   if [ -d tools ] ; then
-     orchidee_rev=2247 
+     if [ "$orchidee_rev" != "" ] ; then
+       set +e ; svn upgrade ; svn update -r $orchidee_rev ; set -e 
+     fi
      veget_version=orchidee2.0
       cd arch 
@@ -661 +706 @@
      echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path
      echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path
+     echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path
+     echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path
      cd ../ 
 # compiling ORCHIDEE sequential mode
@@ -722 +769 @@
 echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
 
-BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
-# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
+if [ $pcmac == 1 ] ; then
+    BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib"
+else
+    BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
+fi
+# Arch-local.fcm file (adapted from arch-linux-32bit.fcm)
 
 if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi
@@ -770 +821 @@
 # sequential compilation and bench
 if [ "$sequential" = 1 ] ; then
-echo "./$makelmdz $OPT_MAKELMDZ -rrtm true -d ${grid_resolution} -v $veget_version gcm " >> compile.sh
-chmod +x ./compile.sh ; ./compile.sh > $lmdzlog 2>&1
+echo "./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_cosp -d ${grid_resolution} -v $veget_version gcm " >> compile.sh
+chmod +x ./compile.sh
+if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi
 echo install.sh apres_compilation `date`
 
@@ -838 +890 @@
   if [ ${hostname:0:5} = ada33 ] ; then echo "module load intel/2013.0" > compile.sh ; fi
   echo resol=${grid_resolution} >> compile.sh
-  echo ./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh
-  chmod +x ./compile.sh ; ./compile.sh > $lmdzlog 2>&1
+  echo ./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh
+  chmod +x ./compile.sh
+  if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi
 
   echo "Compilation finished"