Changeset 1379


Ignore:
Timestamp:
May 6, 2010, 2:19:18 PM (15 years ago)
Author:
lguez
Message:

Added optional ozone tracer with chemistry parameterized by Daniel
Cariolle. This tracer is passive: it has no influence on the rest of
the simulation.

Added variable "zmasse" in file "histrac.nc". Corrected long name of
variable "pplay" in "histrac.nc". Changed name of variable "t" to "T"
in "histrac.nc", corrected long name and unit.

In "phytrac", moved definition of "zmasse" toward the beginning of the
procedure, so that "zmasse" can be given as argument to
"traclmdz". Also added arguments "julien", "gmtime" and "xlon" to
"traclmdz". The four additional arguments are required for the ozone
tracer.

In module "traclmdz_mod", factorized declaration "implicit none" that
was in each procedure. There is now an equivalent single declaration
at the module level.

In procedure "traclmdz", removed variable "delp". Use "zmasse * rg"
instead since we now have "zmasse" as an argument.

Tests. Compilations on Brodie only, with optimization options "-debug"
and "-dev", parallelization options "none", "mpi", "omp" and
"mpi_omp", this revision and revision 1373. Run cases with and without
ozone tracer, 1 and 2 MPI processes, 1 and 2 OpenMP
threads. Comparisons of all cases are ok, except for strange
variations in variables "d_tr_cl_RN" and "d_tr_cl_PB" of file
"histrac.nc", variables "RN" and "PB" of "restart.nc", variables
"trs_RN" and "trs_PB" of "restartphy.nc". Relative variations of these
variables between cases are of order 1e-7 or less, after one day of
simulation.

Location:
LMDZ4/branches/LMDZ4V5.0-dev/libf
Files:
5 added
7 edited

Legend:

Unmodified
Added
Removed

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/dyn3d/etat0_netcdf.F

    r1370 r1379  
    1717      use regr_lat_time_climoz_m, only: regr_lat_time_climoz
    1818      use conf_phys_m, only: conf_phys
     19!     For parameterization of ozone chemistry:
     20      use regr_lat_time_coefoz_m, only: regr_lat_time_coefoz
     21      use press_coefoz_m, only: press_coefoz
     22      use regr_pr_o3_m, only: regr_pr_o3
    1923#endif
    2024!#endif of #ifdef CPP_EARTH
    … …  
    145149      real :: seuil_inversion
    146150      real :: alp_offset
     151      logical found
    147152
    148153      integer  read_climoz ! read ozone climatology
    … …  
    426431      q3d(:,:,:,1) = qd(:,:,:)
    427432      !
     433!     Parameterization of ozone chemistry:
     434C     Look for ozone tracer:
     435      i = 1
     436      DO
     437         found = tname(i)=="O3" .OR. tname(i)=="o3"
     438         if (found .or. i == nqtot) exit
     439         i = i + 1
     440      end do
     441      if (found) then
     442         call regr_lat_time_coefoz
     443         call press_coefoz
     444         call regr_pr_o3(p3d, q3d(:, :, :, i))
     445C     Convert from mole fraction to mass fraction:
     446         q3d(:, :, :, i) = q3d(:, :, :, i)  * 48. / 29.
     447      end if
    428448
    429449!     Ozone climatology:

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/dyn3dpar/etat0_netcdf.F

    r1370 r1379  
    1717      use regr_lat_time_climoz_m, only: regr_lat_time_climoz
    1818      use conf_phys_m, only: conf_phys
     19!     For parameterization of ozone chemistry:
     20      use regr_lat_time_coefoz_m, only: regr_lat_time_coefoz
     21      use press_coefoz_m, only: press_coefoz
     22      use regr_pr_o3_m, only: regr_pr_o3
    1923#endif
    2024!#endif of #ifdef CPP_EARTH
    … …  
    145149      real :: seuil_inversion
    146150      real :: alp_offset
     151      logical found
    147152
    148153      integer  read_climoz ! read ozone climatology
    … …  
    426431      q3d(:,:,:,1) = qd(:,:,:)
    427432      !
     433!     Parameterization of ozone chemistry:
     434C     Look for ozone tracer:
     435      i = 1
     436      DO
     437         found = tname(i)=="O3" .OR. tname(i)=="o3"
     438         if (found .or. i == nqtot) exit
     439         i = i + 1
     440      end do
     441      if (found) then
     442         call regr_lat_time_coefoz
     443         call press_coefoz
     444         call regr_pr_o3(p3d, q3d(:, :, :, i))
     445C     Convert from mole fraction to mass fraction:
     446         q3d(:, :, :, i) = q3d(:, :, :, i)  * 48. / 29.
     447      end if
    428448
    429449!     Ozone climatology:

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/phylmd/ini_histrac.h

    r1279 r1379  
    1414     CALL histdef(nid_tra, "aire", "Grid area", "-",              &
    1515          iim,jj_nb,nhori, 1,1,1, -99, 32,"once",  zsto,zout)
     16     CALL histdef(nid_tra, "zmasse", "column density of air in cell", &
     17          "kg m-2", iim, jj_nb, nhori, klev, 1, klev, nvert, 32, "ave(X)", &
     18          zsto,zout)
    1619
    1720!TRACEURS
    … …  
    9194          "inst(X)",  zout,zout)
    9295! DIVERS
    93      CALL histdef(nid_tra, "pplay", "flux u mont","-",     &
     96     CALL histdef(nid_tra, "pplay", "pressure","-",        &
    9497          iim,jj_nb,nhori, klev,1,klev,nvert, 32,          &
    9598          "inst(X)", zout,zout)
    96      CALL histdef(nid_tra, "t", "flux u mont","-",         &
     99     CALL histdef(nid_tra, "T", "temperature","K",         &
    97100          iim,jj_nb,nhori, klev,1,klev,nvert, 32,          &
    98101          "inst(X)", zout,zout)

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/phylmd/phytrac.F90

    r1376 r1379  
    1 
    21!$Id $
    32
    … …  
    229228!############################################ END INITIALIZATION #######
    230229
     230  DO k=1,klev
     231     DO i=1,klon
     232        zmasse(i,k)=(paprs(i,k)-paprs(i,k+1))/rg
     233     END DO
     234  END DO
     235
    231236!===============================================================================
    232237!    -- Do specific treatment according to chemestry model or local LMDZ tracers
    … …  
    237242     !    -- Traitement des traceurs avec traclmdz
    238243     
    239      CALL traclmdz(&
    240           nstep,    pdtphys,      t_seri,           &
    241           paprs,    pplay,        cdragh,  coefh,   &
    242           yu1,      yv1,          ftsol,   pctsrf,  &
    243           xlat,     couchelimite, sh,               &
    244           tr_seri,  source,       solsym,  d_tr_cl)
     244     CALL traclmdz(nstep, julien, gmtime, pdtphys, t_seri, paprs, pplay, &
     245          cdragh,  coefh, yu1, yv1, ftsol, pctsrf, xlat, xlon, couchelimite, &
     246          sh, tr_seri, source, solsym, d_tr_cl, zmasse)
    245247     
    246248  CASE('inca')
    … …  
    298300!======================================================================
    299301
    300   DO k=1,klev
    301      DO i=1,klon
    302         zmasse(i,k)=(paprs(i,k)-paprs(i,k+1))/rg
    303      END DO
    304   END DO
    305 
    306302  DO it=1,nbtr
    307303     DO k=1,klev

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/phylmd/regr_pr_av_m.F90

    r1279 r1379  
    2121    ! latitude, pressure, julian day.
    2222    ! We assume that the input fields are already on the "rlatu"
    23     ! latitudes, excepth that latitudes are in ascending order in the input
     23    ! latitudes, except that latitudes are in ascending order in the input
    2424    ! file.
    25     ! We assume that the inputs fields have the same pressure coordinate.
     25    ! We assume that all the inputs fields have the same coordinates.
    2626
    2727    ! The target vertical LMDZ grid is the grid of layer boundaries.
    … …  
    9191    if (is_mpi_root) then
    9292       do i = 1, n_var
    93           call nf95_inq_varid(ncid, name(i), varid)
     93          call nf95_inq_varid(ncid, trim(name(i)), varid)
    9494         
    9595          ! Get data at the right day from the input file:
    9696          ncerr = nf90_get_var(ncid, varid, v1(1, :, :, i), &
    9797               start=(/1, 1, julien/))
    98           call handle_err("regr_pr_av nf90_get_var " // name(i), ncerr, ncid)
     98          call handle_err("regr_pr_av nf90_get_var " // trim(name(i)), ncerr, &
     99               ncid)
    99100       end do
    100101       

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/phylmd/traclmdz_mod.F90

    r1376 r1379  
    66! only if running without any other chemestry model as INCA or REPROBUS. 
    77!
     8
     9  IMPLICIT NONE
    810
    911  REAL,DIMENSION(:,:),ALLOCATABLE,SAVE :: masktr   ! Masque reservoir de sol traceur
    … …  
    4446!$OMP THREADPRIVATE(id_pcs0, id_pcos0, id_pcq0)
    4547
     48  INTEGER, SAVE:: id_o3
     49  !$OMP THREADPRIVATE(id_o3)
     50  ! index of ozone tracer with Cariolle parameterization
     51  ! 0 means no ozone tracer
     52
    4653  LOGICAL,SAVE :: rnpb=.TRUE. ! Presence du couple Rn222, Pb210
    4754!$OMP THREADPRIVATE(rnpb)
    … …  
    5663    USE dimphy
    5764    USE infotrac
    58     IMPLICIT NONE
    5965   
    6066    ! Input argument
    … …  
    7884    USE dimphy
    7985    USE infotrac
     86    USE regr_pr_comb_coefoz_m, ONLY: alloc_coefoz
     87    USE press_coefoz_m, ONLY: press_coefoz
    8088    USE carbon_cycle_mod, ONLY : carbon_cycle_init, carbon_cycle_tr, carbon_cycle_cpl
    81 
    82     IMPLICIT NONE
    8389
    8490    INCLUDE "indicesol.h"
    … …  
    135141   
    136142!
    137 ! Recherche des traceurs connus : Be7, CO2,...
     143! Recherche des traceurs connus : Be7, O3, CO2,...
    138144! --------------------------------------------
    139145    id_be=0
     146    id_o3=0
    140147    DO it=1,nbtr
    141148       iiq=niadv(it+2)
    … …  
    149156          CALL init_be(pctsrf,masktr(:,id_be),tautr(id_be),vdeptr(id_be),scavtr(id_be),srcbe)
    150157          WRITE(*,*) 'Initialisation srcBe: OK'
     158       ELSE IF (tname(iiq)=="O3" .OR. tname(iiq)=="o3") THEN
     159          ! Recherche de l'ozone : parametrization de la chimie par Cariolle
     160          id_o3=it
     161          CALL alloc_coefoz   ! allocate ozone coefficients
     162          CALL press_coefoz   ! read input pressure levels
    151163       END IF   
    152164    END DO
    … …  
    311323  END SUBROUTINE traclmdz_init
    312324
    313   SUBROUTINE traclmdz(                           &
    314        nstep,    pdtphys,      t_seri,           &
    315        paprs,    pplay,        cdragh,  coefh,   &
    316        yu1,      yv1,          ftsol,   pctsrf,  &
    317        xlat,     couchelimite, sh,               &
    318        tr_seri,  source,       solsym,  d_tr_cl)
     325  SUBROUTINE traclmdz(nstep, julien, gmtime, pdtphys, t_seri, paprs, pplay, &
     326       cdragh,  coefh, yu1, yv1, ftsol, pctsrf, xlat, xlon, couchelimite, sh, &
     327       tr_seri, source, solsym, d_tr_cl, zmasse)
    319328   
    320329    USE dimphy
    321330    USE infotrac
     331    USE regr_pr_comb_coefoz_m, ONLY: regr_pr_comb_coefoz
     332    USE o3_chem_m, ONLY: o3_chem
    322333    USE carbon_cycle_mod, ONLY : carbon_cycle, carbon_cycle_tr, carbon_cycle_cpl
    323    
    324     IMPLICIT NONE
    325    
    326334    INCLUDE "YOMCST.h"
    327335    INCLUDE "indicesol.h"
    … …  
    335343!Configuration grille,temps:
    336344    INTEGER,INTENT(IN) :: nstep      ! nombre d'appels de la physiq
     345    INTEGER,INTENT(IN) :: julien     ! Jour julien
     346    REAL,INTENT(IN)    :: gmtime
    337347    REAL,INTENT(IN)    :: pdtphys    ! Pas d'integration pour la physique (seconde) 
    338348    REAL,DIMENSION(klon),INTENT(IN) :: xlat    ! latitudes pour chaque point
     349    REAL, INTENT(IN):: xlon(:) ! dim(klon) longitude
    339350
    340351!
    … …  
    344355    REAL,DIMENSION(klon,klev+1),INTENT(IN) :: paprs   ! pression pour chaque inter-couche (en Pa)
    345356    REAL,DIMENSION(klon,klev),INTENT(IN)   :: pplay   ! pression pour le mileu de chaque couche (en Pa)
     357    REAL,intent(in):: zmasse (:, :)   ! dim(klon,klev) density of air, in kg/m2
    346358
    347359
    … …  
    375387
    376388    INTEGER :: i, k, it
     389    INTEGER lmt_pas ! number of time steps of "physics" per day
    377390
    378391    REAL,DIMENSION(klon)           :: d_trs    ! Td dans le reservoir
    379     REAL,DIMENSION(klon,klev)      :: delp     ! epaisseur de couche (Pa)
    380    
    381392    REAL,DIMENSION(klon,klev,nbtr) :: d_tr_dec ! Td radioactive
    382393    REAL                           :: zrho      ! Masse Volumique de l'air KgA/m3
    … …  
    485496    END IF
    486497   
    487 
    488     DO k = 1, klev
    489        DO i = 1, klon
    490           delp(i,k) = paprs(i,k)-paprs(i,k+1)
    491        END DO
    492     END DO
    493    
    494498    DO it=1, nbtr
    495499       IF (couchelimite .AND. pbl_flg(it) == 0 ) THEN ! couche limite avec quantite dans le sol calculee
    … …  
    497501               cdragh, coefh,t_seri,ftsol,pctsrf,  &
    498502               tr_seri(:,:,it),trs(:,it),          &
    499                paprs, pplay, delp,                &
     503               paprs, pplay, zmasse * rg, &
    500504               masktr(:,it),fshtr(:,it),hsoltr(it),&
    501505               tautr(it),vdeptr(it),               &
    … …  
    592596
    593597!======================================================================
     598!   Parameterization of ozone chemistry
     599!======================================================================
     600
     601    IF (id_o3 /= 0) then
     602       lmt_pas = NINT(86400./pdtphys)
     603       IF (MOD(nstep - 1, lmt_pas) == 0) THEN
     604          ! Once per day, update the coefficients for ozone chemistry:
     605          CALL regr_pr_comb_coefoz(julien, xlat, paprs, pplay)
     606       END IF
     607       CALL o3_chem(julien, gmtime, t_seri, zmasse, pdtphys, xlat, &
     608            xlon, tr_seri(:, :, id_o3))
     609    END IF
     610
     611!======================================================================
    594612!   Calcul de cycle de carbon
    595613!======================================================================
    … …  
    607625    USE infotrac
    608626   
    609     IMPLICIT NONE
    610    
    611627    REAL,DIMENSION(klon,nbtr), INTENT(OUT) :: trs_out
    612628    INTEGER :: ierr

  • LMDZ4/branches/LMDZ4V5.0-dev/libf/phylmd/write_histrac.h

    r1279 r1379  
    99     CALL histwrite_phy(nid_tra,"phis",itau_w,pphis)
    1010     CALL histwrite_phy(nid_tra,"aire",itau_w,airephy)
     11     CALL histwrite_phy(nid_tra,"zmasse",itau_w,zmasse)
    1112
    1213!TRACEURS
    … …  
    6566! DIVERS   
    6667     CALL histwrite_phy(nid_tra,"pplay",itau_w,pplay)     
    67      CALL histwrite_phy(nid_tra,"t",itau_w,t_seri)     
     68     CALL histwrite_phy(nid_tra,"T",itau_w,t_seri)     
    6869     CALL histwrite_phy(nid_tra,"mfu",itau_w,pmfu)
    6970     CALL histwrite_phy(nid_tra,"mfd",itau_w,pmfd)
Note: See TracChangeset for help on using the changeset viewer.