source: dynamico_lmdz/aquaplanet/ICOSA_LMDZ/make_icosa_lmdz

#!/bin/bash
#set -x

# Use FCM from DYNAMICO
export PATH=$PWD/../DYNAMICO/tools/FCM/bin:$PATH
export ROOT=$PWD

echo $0 $* > rebuild_all
chmod a+x rebuild_all

compil_mode_defined="FALSE"
compil_mode="prod"

job=1
full_defined="FALSE"
with_xios_defined="TRUE"
with_orchidee_defined="FALSE"
with_oasis_defined="FALSE"
arch_defined="FALSE"
parallel_defined="FALSE"
arch_path="../ARCH"
arch_default_path="arch"
parallel="none"
phys="none"
build_deps="TRUE"
CPP_KEY="CPP_NONE" 
ICOSA_LIB=""
rrtm="false"

while (($# > 0))
  do
  case $1 in
      "-h") cat <<fin
Usage :
makegcm [options] -m arch -p phys  exec
[-h]                       : help
[-prod / -dev / -debug]    : compilation en mode production (default) / developpement / debug .
[-nodeps]                  : do not build dependencies (XIOS, IOIPSL, LMDZ, DYNAMICO must be compiled already)
 -arch nom_arch            : nom de l\'architecture cible
 -p phys                   : physics package (e.g. std , venus , ...)
[-p_opt "options"]         : additional options for physics package
fin
          exit;;

      "-p")
          phys=$2 ; shift ; shift ;;
      
      "-p_opt")
          phys_opt=$2 ; shift ; shift ;;

      "-rrtm")
          rrtm=$2 ; shift ; shift ;;
         
      "-prod")
          compil_mode="prod" ; shift ;;

      "-dev")
          compil_mode="dev" ; shift ;;

      "-debug")
          compil_mode="debug" ; shift ;;

      "-arch")
          arch=$2 ; arch_defined="TRUE"; shift ; shift ;;
 
      "-arch_path")
          arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;

      "-parallel")
          parallel=$2 ; parallel_defined="TRUE"; shift ; shift ;;

      "-job")
          job=$2 ; shift ; shift;;

      "-full")
          full_defined="TRUE" ; shift ;;

      "-nodeps")
          build_deps="FALSE" ; shift ;;

      "-with_xios")
          with_xios_defined="TRUE" ; shift ;;

      "-with_orchidee")
          with_orchidee_defined="TRUE" ; shift ;;

      "-with_oasis")
      with_oasis_defined="TRUE" ; shift ;;


      *)
          code="$1" ; shift ;;
  esac
done

rm -f .void_file
echo > .void_file
rm -rf .void_dir
mkdir .void_dir

if [[ "$arch_defined" == "TRUE" ]]
then
  rm -f arch.path
  rm -f arch.fcm
  rm -f arch.env

  if test -f $arch_path/arch-${arch}.path
  then
    ln -s $arch_path/arch-${arch}.path arch.path
  elif test -f $arch_default_path/arch-${arch}.path
  then
    ln -s $arch_default_path/arch-${arch}.path arch.path
  fi
        
  if test -f $arch_path/arch-${arch}.fcm
  then
    ln -s $arch_path/arch-${arch}.fcm arch.fcm
  elif test -f $arch_default_path/arch-${arch}.fcm
  then
    ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
  fi

  if test -f $arch_path/arch-${arch}.env
  then
    ln -s $arch_path/arch-${arch}.env arch.env
  elif test -f $arch_default_path/arch-${arch}.env
  then
    ln -s $arch_default_path/arch-${arch}.env arch.env
  else
    ln -s .void_file arch.env
  fi
  source arch.env
  source arch.path
else
  echo "Please define a target architecture"
  exit 1
fi

LD_FLAGS="%BASE_LD"

if [[ "$compil_mode" == "prod" ]]
then
  COMPIL_FFLAGS="%PROD_FFLAGS"
elif [[ "$compil_mode" == "dev" ]]
then
  COMPIL_FFLAGS="%DEV_FFLAGS"
elif [[ "$compil_mode" == "debug" ]]
then
  COMPIL_FFLAGS="%DEBUG_FFLAGS"
fi

if [[ "$parallel" == "mpi" ]]
then
  CPP_KEY="$CPP_KEY CPP_USING_MPI"
elif [[ "$parallel" == "omp" ]]
then
  CPP_KEY="$CPP_KEY CPP_USING_OMP"
  COMPIL_FFLAGS="$COMPIL_FFLAGS %OMP_FFLAGS"
  LD_FLAGS="$LD_FLAGS %OMP_LD"
elif [[ "$parallel" == "mpi_omp" ]]
then
  CPP_KEY="$CPP_KEY CPP_USING_MPI CPP_USING_OMP"
  COMPIL_FFLAGS="$COMPIL_FFLAGS %OMP_FFLAGS"
  LD_FLAGS="$LD_FLAGS %OMP_LD"
elif [[ "$parallel" == "none" ]]
then
  parallel="none"
else 
  echo "-parallel value $parallel is invalid, only permited <none>, <mpi>, <omp> or <mpi_omp>"
  exit 1
fi

if [[ "$with_orchidee_defined" == "TRUE" ]]
then
  ICOSA_LIB="$ICOSA_LIB $ORCHIDEE_LIBDIR $ORCHIDEE_LIB"
fi  

if [[ "$with_oasis_defined" == "TRUE" ]]
then
  ICOSA_LIB="$ICOSA_LIB $OASIS_LIBDIR $OASIS_LIB"
fi


if [[ "$with_xios_defined" == "TRUE" ]]
then
  CPP_KEY="$CPP_KEY CPP_USING_XIOS"
  COMPIL_FFLAGS="$COMPIL_FFLAGS $XIOS_INCDIR"
  ICOSA_LIB="$ICOSA_LIB $XIOS_LIBDIR $XIOS_LIB"
fi  

ICOSA_LIB="$ICOSA_LIB $IOIPSL_LIBDIR $IOIPSL_LIB $NETCDF_LIBDIR $NETCDF_LIB $HDF5_LIBDIR $HDF5_LIB"

rm bin/*

if [[ "$full_defined" == "TRUE" ]]
then
  full_flag="-full"
  full_flag2="--full"
else 
  full_flag=""
  full_flag2=""
fi

rm -f config.fcm

echo "%COMPIL_FFLAGS $COMPIL_FFLAGS $NETCDF_INCDIR" >> config.fcm
echo "%LD_FLAGS $LD_FLAGS" >> config.fcm
echo "%CPP_KEY $CPP_KEY" >> config.fcm
echo "%PHYS phy$phys" >> config.fcm
echo "%LIB $ICOSA_LIB">> config.fcm

if [[ "$build_deps" == "TRUE" ]]
then

    cd ../IOIPSL
    ./makeioipsl_fcm -$compil_mode -parallel -arch $arch -arch_path $arch_path -j $job $full_flag  || exit 1
    cd -

    cd ../XIOS
    ./make_xios --$compil_mode --arch $arch --arch_path $arch_path --job $job $full_flag2 || exit 1
    cd -

    if [[ "$with_orchidee_defined" == "TRUE" ]]
    then
        cd ../ORCHIDEE
        ./makeorchidee_fcm -$compil_mode -parallel $parallel -xios2 -arch $arch -arch_path $arch_path -j $job $full_flag  || exit 1
        cd -
    fi

    cd ../LMDZ
    lmdz_veget="false"
    if [[ "$with_orchidee_defined" == "TRUE" ]]
    then
        lmdz_veget="orchidee2.0 -cpp ORCHIDEE_NOZ0H"
    fi
    ./makelmdz_fcm -p $phys $phys_opt -rrtm $rrtm -$compil_mode -mem -parallel $parallel -libphy -io xios -v $lmdz_veget -arch $arch -arch_path $arch_path -j $job $full_flag || exit 1
    cd -

    cd ../DYNAMICO
    ./make_icosa -$compil_mode -parallel $parallel -external_ioipsl -with_xios -arch $arch -arch_path $arch_path -job $job $full_flag || exit 1
    cd -
fi

./build --job $job $full_flag2