1 | #!/bin/bash |
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2 | # $Id: makelmdz_fcm 1907 2013-11-26 13:10:46Z lguez $ |
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3 | # This is a script in Bash. |
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4 | |
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5 | # FH : on ne crée plus le fichier arch.mk qui est supposé exister par |
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6 | # FH : ailleurs. |
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7 | # FH : ulterieurement, ce fichier sera pré-existant pour une série |
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8 | # FH : de configurations en versions optimisées et debug qui seront |
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9 | # FH : liés (ln -s) avec arch.mk en fonction de l'architecture. |
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10 | # FH : Pour le moment, cette version est en test et on peut créer les |
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11 | # FH : arch.mk en lançant une première fois makegcm. |
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12 | # |
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13 | ##set -x |
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14 | ######################################################################## |
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15 | # options par defaut pour la commande make |
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16 | ######################################################################## |
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17 | |
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18 | dim="96x72x19" |
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19 | physique=lmd |
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20 | filtre=filtrez |
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21 | grille=reg |
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22 | couple=false |
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23 | veget=false |
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24 | sisvat=false |
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25 | chimie=false |
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26 | parallel=none |
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27 | paramem="par" |
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28 | compil_mod=prod |
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29 | io=ioipsl |
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30 | LIBPREFIX="" |
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31 | cosp=false |
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32 | job=1 |
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33 | full='' |
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34 | |
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35 | LMDGCM=`/bin/pwd` |
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36 | LIBOGCM=$LMDGCM/libo |
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37 | LIBFGCM=$LMDGCM/libf |
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38 | COSP_PATH=$LMDGCM/.void_dir |
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39 | fcm_path=$LMDGCM/tools/fcm/bin |
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40 | |
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41 | ######################################################################## |
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42 | # Quelques initialisations de variables du shell. |
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43 | ######################################################################## |
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44 | |
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45 | CPP_KEY="" |
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46 | INCLUDE="" |
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47 | LIB="" |
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48 | adjnt="" |
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49 | COMPIL_FFLAGS="%PROD_FFLAGS" |
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50 | PARA_FFLAGS="" |
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51 | PARA_LD="" |
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52 | EXT_SRC="" |
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53 | |
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54 | ######################################################################## |
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55 | # lecture des options de mymake |
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56 | ######################################################################## |
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57 | |
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58 | while (($# > 0)) |
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59 | do |
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60 | case $1 in |
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61 | "-h") cat <<fin |
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62 | Usage : |
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63 | makelmdz_fcm [options] -arch nom_arch exec |
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64 | [-h] : brief help |
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65 | [-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim) |
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66 | [-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd) |
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67 | [-prod / -dev / -debug] : compilation mode production (default) / developement / debug |
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68 | [-c false/MPI1/MPI2] : coupling with ocean model : MPI1/MPI2/false (default: false) |
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69 | [-v false/orchidee2.0/orchidee1.9/true] : version of the vegetation model to include (default: false) |
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70 | false : no vegetation model |
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71 | orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version) |
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72 | orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6 |
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73 | true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6 |
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74 | [-chimie INCA/false] : with INCA chemistry model or without (default: false) |
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75 | [-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp |
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76 | [-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom) |
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77 | [-io IO] : Input/Output library (default: ioipsl) |
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78 | [-include INCLUDES] : extra include path to add |
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79 | [-cpp CPP_KEY] : additional preprocessing definitions |
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80 | [-adjnt] : adjoint model, not operational ... |
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81 | [-mem] : reduced memory dynamics (if in parallel mode) |
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82 | [-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez) |
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83 | [-link LINKS] : additional links with other libraries |
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84 | [-j n] : active parallel compiling on ntask |
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85 | [-full] : full recompiling |
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86 | [-fcm_path path] : path to the fcm tool (default: tools/fcm/bin) |
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87 | [-ext_src path] : path to an additional set of routines to compile with the model |
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88 | -arch nom_arch : target architecture |
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89 | exec : executable to build |
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90 | fin |
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91 | exit;; |
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92 | |
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93 | "-d") |
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94 | dim=$2 ; shift ; shift ;; |
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95 | |
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96 | "-p") |
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97 | physique="$2" ; shift ; shift ;; |
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98 | |
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99 | "-g") |
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100 | grille="$2" ; shift ; shift ;; |
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101 | |
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102 | "-c") |
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103 | couple="$2" ; shift ; shift ;; |
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104 | |
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105 | "-prod") |
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106 | compil_mod="prod" ; shift ;; |
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107 | |
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108 | "-dev") |
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109 | compil_mod="dev" ; shift ;; |
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110 | |
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111 | "-debug") |
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112 | compil_mod="debug" ; shift ;; |
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113 | |
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114 | "-io") |
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115 | io="$2" ; shift ; shift ;; |
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116 | |
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117 | "-v") |
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118 | veget="$2" ; shift ; shift ;; |
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119 | |
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120 | "-sisvat") |
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121 | sisvat="$2" ; shift ; shift ;; |
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122 | |
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123 | "-chimie") |
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124 | chimie="$2" ; shift ; shift ;; |
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125 | |
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126 | "-parallel") |
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127 | parallel="$2" ; shift ; shift ;; |
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128 | |
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129 | "-include") |
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130 | INCLUDE="$INCLUDE -I$2" ; shift ; shift ;; |
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131 | |
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132 | "-cpp") |
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133 | CPP_KEY="$CPP_KEY $2" ; shift ; shift ;; |
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134 | |
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135 | "-adjnt") |
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136 | echo "not operational ... work to be done here ";exit |
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137 | opt_dep="$opt_dep adjnt" ; adjnt="-ladjnt -ldyn3d " |
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138 | optim="$optim -Dadj" ; shift ;; |
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139 | |
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140 | "-cosp") |
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141 | cosp="$2" ; shift ; shift ;; |
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142 | |
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143 | "-mem") |
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144 | paramem="mem" ; shift ;; |
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145 | |
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146 | "-filtre") |
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147 | filtre=$2 ; shift ; shift ;; |
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148 | |
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149 | "-link") |
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150 | LIB="$LIB $2" ; shift ; shift ;; |
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151 | |
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152 | "-fcm_path") |
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153 | fcm_path=$2 ; shift ; shift ;; |
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154 | |
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155 | "-ext_src") |
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156 | EXT_SRC=$2 ; shift ; shift ;; |
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157 | "-j") |
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158 | job=$2 ; shift ; shift ;; |
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159 | "-full") |
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160 | full="-full" ; shift ;; |
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161 | |
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162 | "-arch") |
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163 | arch=$2 ; shift ; shift ;; |
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164 | |
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165 | *) |
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166 | code="$1" ; shift ;; |
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167 | esac |
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168 | done |
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169 | |
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170 | ############################################################### |
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171 | # path to fcm |
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172 | ############################################################### |
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173 | # handle case when provided path to fcm was given as a relative |
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174 | # path (from makelmdz_fcm script directory) and not an absolute path |
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175 | if [[ ${fcm_path:0:1} != "/" ]] ; then |
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176 | # prepend with makelmdz_fcm location |
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177 | fcm_path=$(cd $(dirname $0) ; pwd)"/"${fcm_path} |
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178 | fi |
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179 | |
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180 | # add fcm_path to PATH |
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181 | export PATH=${fcm_path}:${PATH} |
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182 | |
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183 | echo "Path to fcm:" |
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184 | echo ${fcm_path} |
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185 | |
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186 | ############################################################### |
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187 | # lecture des chemins propres à l'architecture de la machine # |
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188 | ############################################################### |
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189 | rm -f .void_file |
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190 | echo > .void_file |
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191 | rm -rf .void_dir |
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192 | mkdir .void_dir |
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193 | rm -f arch.path |
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194 | ln -s arch/arch-${arch}.path ./arch.path |
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195 | source arch.path |
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196 | |
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197 | ######################################################################## |
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198 | # Definition des clefs CPP, des chemins des includes et modules |
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199 | # et des libraries |
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200 | ######################################################################## |
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201 | |
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202 | if [[ "$compil_mod" == "prod" ]] |
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203 | then |
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204 | COMPIL_FFLAGS="%PROD_FFLAGS" |
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205 | elif [[ "$compil_mod" == "dev" ]] |
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206 | then |
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207 | COMPIL_FFLAGS="%DEV_FFLAGS" |
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208 | elif [[ "$compil_mod" == "debug" ]] |
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209 | then |
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210 | COMPIL_FFLAGS="%DEBUG_FFLAGS" |
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211 | fi |
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212 | |
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213 | if [[ "$physique" != "nophys" ]] |
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214 | then |
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215 | #We'll use some physics |
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216 | CPP_KEY="$CPP_KEY CPP_PHYS" |
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217 | if [[ "${physique:0:3}" == "lmd" ]] |
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218 | then |
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219 | #For lmd physics, default planet type is Earth |
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220 | CPP_KEY="$CPP_KEY CPP_EARTH" |
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221 | fi |
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222 | fi |
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223 | |
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224 | if [[ "$chimie" == "INCA" ]] |
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225 | then |
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226 | CPP_KEY="$CPP_KEY INCA" |
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227 | INCLUDE="$INCLUDE -I${INCA_INCDIR}" |
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228 | LIB="$LIB -L${INCA_LIBDIR} -lchimie" |
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229 | fi |
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230 | |
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231 | if [[ "$couple" != "false" ]] |
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232 | then |
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233 | CPP_KEY="$CPP_KEY CPP_COUPLE" |
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234 | INCLUDE="$INCLUDE -I${OASIS_INCDIR}" |
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235 | LIB="$LIB -L${OASIS_LIBDIR} -lpsmile.${couple} -lmpp_io" |
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236 | fi |
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237 | |
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238 | if [[ "$parallel" == "mpi" ]] |
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239 | then |
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240 | CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI" |
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241 | PARA_FFLAGS="%MPI_FFLAGS" |
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242 | PARA_LD="%MPI_LD" |
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243 | elif [[ "$parallel" == "omp" ]] |
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244 | then |
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245 | CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP" |
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246 | PARA_FFLAGS="%OMP_FFLAGS" |
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247 | PARA_LD="%OMP_LD" |
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248 | elif [[ "$parallel" == "mpi_omp" ]] |
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249 | then |
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250 | CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP" |
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251 | PARA_FFLAGS="%MPI_FFLAGS %OMP_FFLAGS" |
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252 | PARA_LD="%MPI_LD %OMP_LD" |
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253 | fi |
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254 | |
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255 | if [[ ( "$parallel" == "omp" || "$parallel" == "mpi_omp" ) \ |
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256 | && "$compil_mod" == "debug" ]] |
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257 | then |
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258 | echo "Usually, parallelization with OpenMP requires some optimization." |
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259 | echo "We suggest switching to \"-dev\"." |
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260 | fi |
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261 | |
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262 | if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" ] |
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263 | then |
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264 | #NB: option 'true': for backward compatibility. To be used with ORCHIDEE tag 1.9-1.9.6 |
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265 | # For this case, cpp flag ORCHIDEE_NOOPENMP must be added to the makelmdz_fcm arguments |
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266 | # option orchidee1.9 : Compile with ORCHIDEE version up to the inclusion of OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6 |
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267 | INCLUDE="${INCLUDE} -I${ORCH_INCDIR}" |
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268 | CPP_KEY="$CPP_KEY CPP_VEGET" |
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269 | # temporary, for Orchidee versions 1.9.* (before openmp activation) |
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270 | if [[ "$veget" == "orchidee1.9" ]] ; then |
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271 | CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP" |
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272 | fi |
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273 | if [[ "$veget" == "orchidee2.0" ]] ; then |
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274 | orch_libs="sechiba parameters stomate parallel orglob orchidee" |
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275 | else |
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276 | orch_libs="sechiba parameters stomate parallel orglob" |
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277 | fi |
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278 | LIB="${LIB} -L${ORCH_LIBDIR}" |
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279 | for lib in ${orch_libs} ; do |
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280 | if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then |
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281 | LIB="${LIB} -l${LIBPREFIX}$lib " |
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282 | fi |
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283 | done |
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284 | elif [[ "$veget" != "false" ]] ; then |
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285 | echo "Option -v $veget does not exist" |
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286 | echo "Use ./makelmdz_fcm -h for more information" |
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287 | exit |
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288 | fi |
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289 | |
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290 | if [[ "$sisvat" == "true" ]] |
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291 | then |
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292 | CPP_KEY="$CPP_KEY CPP_SISVAT" |
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293 | sed -e 's/^#src::sisvat/src::sisvat/' bld.cfg > bld.tmp |
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294 | mv bld.tmp bld.cfg |
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295 | fi |
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296 | |
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297 | if [[ $io == ioipsl ]] |
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298 | then |
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299 | CPP_KEY="$CPP_KEY CPP_IOIPSL" |
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300 | INCLUDE="$INCLUDE -I${IOIPSL_INCDIR}" |
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301 | LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl" |
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302 | elif [[ $io == xios ]] |
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303 | then |
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304 | # For now, xios implies also using ioipsl |
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305 | CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS" |
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306 | INCLUDE="$INCLUDE -I${IOIPSL_INCDIR} -I${XIOS_INCDIR}" |
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307 | LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl -L${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios" |
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308 | fi |
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309 | |
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310 | if [[ "$cosp" == "true" ]] |
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311 | then |
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312 | CPP_KEY="$CPP_KEY CPP_COSP" |
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313 | COSP_PATH="$LIBFGCM/cosp" |
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314 | # LIB="${LIB} -l${LIBPREFIX}cosp" |
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315 | fi |
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316 | |
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317 | INCLUDE="$INCLUDE ${NETCDF_INCDIR}" |
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318 | LIB="$LIB ${NETCDF_LIBDIR}" |
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319 | |
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320 | ######################################################################## |
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321 | # calcul du nombre de dimensions |
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322 | ######################################################################## |
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323 | |
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324 | |
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325 | dim_full=$dim |
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326 | dim=`echo $dim | sed -e 's/[^0-9]/ /g'` |
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327 | set $dim |
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328 | dimc=$# |
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329 | echo calcul de la dimension |
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330 | echo dim $dim |
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331 | echo dimc $dimc |
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332 | |
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333 | |
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334 | ######################################################################## |
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335 | # Gestion des dimensions du modele. |
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336 | # on cree ou remplace le fichier des dimensions |
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337 | ######################################################################## |
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338 | |
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339 | cd $LIBFGCM/grid |
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340 | if [[ -f dimensions.h ]] |
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341 | then |
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342 | echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs' |
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343 | echo "Attendez que la premiere compilation soit terminee pour relancer la suivante." |
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344 | echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs," |
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345 | echo vous pouvez continuer en repondant oui. |
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346 | echo "Voulez-vous vraiment continuer?" |
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347 | echo "" |
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348 | echo "WARNING: you are probably already compiling the model somewhere else." |
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349 | echo "Wait until the first compilation is finished before launching this one." |
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350 | echo "If you are sure that you are not compiling elsewhere, just answer " |
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351 | echo "yes (or 'oui') to the question below to proceed." |
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352 | echo "Do you wish to continue?" |
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353 | read reponse |
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354 | if [[ $reponse == "oui" || $reponse == "yes" ]] |
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355 | then |
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356 | \rm -f $LIBFGCM/grid/dimensions.h |
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357 | else |
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358 | exit |
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359 | fi |
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360 | fi |
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361 | |
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362 | |
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363 | cd $LIBFGCM/grid/dimension |
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364 | ./makdim $dim |
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365 | cat $LIBFGCM/grid/dimensions.h |
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366 | cd $LMDGCM |
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367 | |
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368 | |
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369 | ######################################################################## |
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370 | # Differentes dynamiques (3d, 2d, 1d) |
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371 | ######################################################################## |
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372 | |
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373 | dimension=`echo $dim | wc -w` |
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374 | echo dimension $dimension |
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375 | |
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376 | if (( $dimension == 3 )) |
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377 | then |
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378 | cd $LIBFGCM/grid |
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379 | \rm fxyprim.h |
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380 | cp -p fxy_${grille}.h fxyprim.h |
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381 | else |
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382 | echo "Probleme dans les dimensions de la dynamique !!" |
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383 | echo "Non reactive pour l'instant !!!" |
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384 | fi |
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385 | |
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386 | ###################################################################### |
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387 | # Traitement special pour le nouveau rayonnement de Laurent Li. |
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388 | # ---> YM desactive pour le traitemement en parallele |
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389 | ###################################################################### |
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390 | |
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391 | #if [[ -f $libf/phy$physique/raddim.h ]] |
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392 | #then |
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393 | # if [[ -f $libf/phy$physique/raddim.$dimh.h ]] |
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394 | #then |
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395 | # \rm -f $libf/phy$physique/raddim.h |
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396 | # cp -p $libf/phy$physique/raddim.$dimh.h $libf/phy$physique/raddim.h |
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397 | # echo $libf/phy$physique/raddim.$dimh.h |
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398 | # cat $libf/phy$physique/raddim.h |
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399 | # else |
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400 | # echo On peut diminuer la taille de l executable en creant |
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401 | # echo le fichier $libf/phy$physique/raddim.$dimh.h |
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402 | # \cp -p $libf/phy$physique/raddim.defaut.h $libf/phy$physique/raddim.h |
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403 | # fi |
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404 | #fi |
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405 | |
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406 | ###################################################################### |
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407 | # Gestion du filtre qui n'existe qu'en 3d. |
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408 | ###################################################################### |
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409 | |
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410 | if (( `expr $dimc \> 2` == 1 )) |
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411 | then |
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412 | filtre="FILTRE=$filtre" |
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413 | else |
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414 | filtre="FILTRE= L_FILTRE= " |
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415 | fi |
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416 | echo MACRO FILTRE $filtre |
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417 | |
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418 | echo $dimc |
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419 | |
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420 | |
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421 | |
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422 | ###################################################################### |
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423 | # Creation du suffixe de la configuration |
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424 | ###################################################################### |
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425 | |
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426 | |
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427 | SUFF_NAME=_${dim_full} |
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428 | SUFF_NAME=${SUFF_NAME}_phy${physique} |
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429 | |
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430 | if [[ "$parallel" != "none" ]] |
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431 | then |
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432 | SUFF_NAME=${SUFF_NAME}_para |
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433 | DYN=dyn${dimc}d${paramem} |
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434 | if [[ "$paramem" == "mem" ]] |
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435 | then |
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436 | SUFF_NAME=${SUFF_NAME}_${paramem} |
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437 | fi |
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438 | else |
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439 | SUFF_NAME=${SUFF_NAME}_seq |
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440 | DYN=dyn${dimc}d |
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441 | fi |
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442 | |
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443 | if [[ $veget != "false" ]] |
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444 | then |
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445 | SUFF_NAME=${SUFF_NAME}_orch |
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446 | fi |
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447 | |
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448 | if [[ $couple != "false" ]] |
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449 | then |
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450 | SUFF_NAME=${SUFF_NAME}_couple |
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451 | fi |
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452 | |
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453 | if [[ $chimie == "INCA" ]] |
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454 | then |
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455 | SUFF_NAME=${SUFF_NAME}_inca |
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456 | fi |
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457 | |
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458 | cd $LMDGCM |
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459 | config_fcm="config.fcm" |
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460 | rm -f $config_fcm |
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461 | touch $config_fcm |
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462 | rm -f bin/${code}${SUFF_NAME}.e |
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463 | rm -f arch.fcm |
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464 | rm -f arch.opt |
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465 | |
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466 | echo "%ARCH $arch" >> $config_fcm |
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467 | echo "%INCDIR $INCLUDE" >> $config_fcm |
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468 | echo "%LIB $LIB" >> $config_fcm |
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469 | echo "%ROOT_PATH $PWD" >> $config_fcm |
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470 | echo "%LIBF $LIBFGCM" >> $config_fcm |
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471 | echo "%LIBO $LIBOGCM" >> $config_fcm |
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472 | echo "%DYN $DYN" >> $config_fcm |
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473 | echo "%PHYS phy${physique}" >> $config_fcm |
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474 | echo "%COSP $COSP_PATH" >> $config_fcm |
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475 | echo "%CPP_KEY $CPP_KEY" >> $config_fcm |
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476 | echo "%EXEC $code" >> $config_fcm |
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477 | echo "%SUFF_NAME $SUFF_NAME" >> $config_fcm |
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478 | echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> $config_fcm |
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479 | echo "%PARA_FFLAGS $PARA_FFLAGS" >> $config_fcm |
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480 | echo "%PARA_LD $PARA_LD" >> $config_fcm |
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481 | echo "%EXT_SRC $EXT_SRC" >> $config_fcm |
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482 | |
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483 | |
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484 | |
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485 | ln -s arch/arch-${arch}.fcm arch.fcm |
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486 | if test -f arch/arch-${arch}.opt && [ $compil_mod = "prod" ] |
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487 | then |
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488 | ln -s arch/arch-${arch}.opt arch.opt |
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489 | else |
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490 | ln -s .void_file arch.opt |
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491 | fi |
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492 | |
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493 | |
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494 | rm -f $LIBOGCM/${arch}${SUFF_NAME}/.config/fcm.bld.lock |
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495 | ./build_gcm ${fcm_path} -j $job $full |
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496 | |
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497 | rm -rf tmp_src |
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498 | rm -rf config |
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499 | ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config config |
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500 | ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config/tmp tmp_src |
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501 | |
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502 | #eventual cleanup for SISVAT |
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503 | sed -e 's/^src::sisvat/#src::sisvat/' bld.cfg > bld.tmp |
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504 | mv bld.tmp bld.cfg |
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505 | |
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506 | |
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507 | if [[ -r $LIBFGCM/grid/dimensions.h ]] |
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508 | then |
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509 | # Cleanup: remove dimension.h file |
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510 | \rm -f $LIBFGCM/grid/dimensions.h |
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511 | fi |
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