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source: BOL/script_install/install_lmdz.sh @ 3076

Last change on this file since 3076 was 3076, checked in by fhourdin, 7 years ago
New version of the install_lmdz.sh script which uses the new repository paths (pub/*) framework.
File size: 33.6 KB

Line
1	#!/bin/bash
2
3	###########################################################################
4	# Author : Laurent Fairhead et Frédéric Hourdin
5	# Usage : install_lmdz.sh -help
6	#
7	# bash installation script of the LMDZ model on a Linux PC.
8	# the model is downloaded in the following direcory tree
9	# $MODEL/modipsl/modeles/...
10	# using the "modipsl" infrastructure created by the "IPSL"
11	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12	# activities.
13	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14	# components.
15	#
16	# The sources of the models can be found in the "modeles" directory.
17	# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18	# using the NetCDF library.
19	#
20	# The script downloads various source files (including a version of NetCDF)
21	# and utilities, compiles the model, and runs a test simulation in a
22	# munimal configuration.
23	#
24	# Prerequisites : pgf90/gfortran, ksh, wget , gunzip, tar, ...
25	#
26	# Modif 18/11/2011
27	# changes for option real 8.
28	# We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29	# but with -r4 for netcdf. Variable real must be set to
30	# r4 or r8 at the beginning of the script below.
31	#
32	###########################################################################
33
34	echo install.sh DEBUT `date`
35
36	set -e
37
38	################################################################
39	# Choice of installation options
40	################################################################
41
42	# A function to fetch files either locally or on the internet
43	function myget { #1st and only argument should be file name
44	# Path on local computer where to look for the datafile
45	if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then
46	\cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 .
47	elif [ -f ~/LMDZ/pub/$1 ] ; then
48	\cp -f -p ~/LMDZ/pub/$1 .
49	else
50	wget http://www.lmd.jussieu.fr/~lmdz/pub/$1
51	#dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir ; cp -r `basename $1` $dir
52	fi
53	}
54
55
56	#real=r4
57	real=r8
58
59	# WARNING !!!! For versions before october 2009, use
60	# install.v2.sh instead of install.sh
61
62	#########################################################################
63	# Valeur par défaut des parametres
64	#########################################################################
65	svn=""
66	version=trunk
67	getlmdzor=1
68	netcdf=1 # 1 for automatic installation
69	# 0 for no installation
70	# /.../../netcdf-4.0.1 if wanting to link with an already
71	# compiled netcdf library (implies to check option compatibility)
72	check_linux=1
73	ioipsl=1
74	veget=1
75	bench=1
76	pclinux=1
77	SCM=0
78	# use the old orchidee interface without the calculation of z0h
79	no_z0h_orc=1
80	# choose the resolution for the bench runs
81	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
82	# 96x71x19 standard configuration
83	grid_resolution=144x142x79
84	grid_resolution=48x36x19
85
86	## parallel can take the values none/mpi/omp/mpi_omp
87	parallel=mpi_omp
88	parallel=none
89	OPT_GPROF=""
90	OPT_MAKELMDZ=""
91	MODEL=""
92
93	## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no
94	with_xios="n"
95	opt_makelmdz_xios=""
96
97	#########################################################################
98	# Options interactives
99	#########################################################################
100	while (($# > 0))
101	do
102	case $1 in
103	"-h") cat <<........fin
104	$0 [ -v version ] [ -r svn_release ]
105	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
106	[-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz]
107
108	-v "version" like 20150828.trunk
109	see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk
110
111	-r "svn_release" : either the svn release number or "last"
112
113	-parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential)
114
115	-d GRID_RESOLUTION should be among the available benchs if -bench 1
116	among which : 48x36x19, 48x36x39
117	if wanting to run a bench simulation in addition to compilation
118	default : 48x36x19
119
120	-bench activating the bench or not (0/1). Default 1
121
122	-name LOCAL_MODEL_NAME : default = LMDZversion.release
123
124	-netcdf PATH : full path to an existing installed NetCDF library
125	(without -netcdf: also download and install the NetCDF library)
126
127	-xios also download and compile the XIOS library
128	(requires the NetCDF4-HDF5 library, also installed by default)
129	(requires to also have -parallel mpi_omp)
130
131	-gprof to compile with -pg to enable profiling with gprof
132
133	-SCM install 1D version automatically
134
135	-opt_makelmdz to call makelmdz or makelmdz_fcm with additional options
136	........fin
137	exit ;;
138	"-v") version=$2 ; shift ; shift ;;
139	"-r") svn=$2 ; shift ; shift ;;
140	"-d") grid_resolution=$2 ; shift ; shift ;;
141	"-gprof") OPT_GPROF="-pg" ; shift ;;
142	"-SCM") SCM=1 ; shift ;;
143	"-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;;
144	"-parallel") parallel=$2
145	case $parallel in
146	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2 ; shift ; shift ;;
147	*) echo Only none mpi omp mpi_omp for the parallel option ; exit
148	esac ;;
149	"-bench") bench=$2 ; shift ; shift ;;
150	"-name") MODEL=$2 ; shift ; shift ;;
151	"-netcdf") netcdf=$2 ; shift ; shift ;;
152	"-xios") with_xios="y" ; shift ;;
153	*) ./install_lmdz.sh -h ; exit
154	esac
155	done
156
157	if [ $parallel = none ] ; then sequential=1 ; else sequential=0 ; fi
158
159
160	compilo=gfortran # compilo=pgf90 or gfortran or ifort sur PC linux
161	#Chemin pour placer le modele
162	if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn ; fi
163
164
165	## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
166	compile_with_fcm=1
167	arch=local
168
169
170	if [ $compilo = g95 ] ; then echo g95 is not supported anymore ; exit ; fi
171
172	################################################################
173	# Specificite des machines
174	################################################################
175
176	hostname=`hostname`
177	if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi
178
179	case ${hostname:0:5} in
180
181	ada33) compilo="ifort" ;
182	par_comp="ifort" ;
183	o_ins_make="-t ada" ;
184	make=gmake ;
185	# module load intel/2013.0 ;
186	arch=X64_ADA ;;
187
188	cicla) compilo="gfortran" ;
189	if [ $parallel != none ] ; then
190	module load openmpi/1.4.5-gfortran ;
191	root_mpi=$MPI_HOME ;
192	path_mpi=$root_mpi/bin ;
193	par_comp=${path_mpi}/mpif90 ;
194	mpirun=${path_mpi}/mpirun ;
195	fi ;
196	arch=local ;
197	make=make ;
198	o_ins_make="-t g95" ;;
199
200	*) compilo="gfortran" ;
201	if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then
202	path_mpi=`which mpif90 \| sed -e s:/mpif90::` ;
203	if [ -d /usr/lib64/openmpi ] ; then
204	root_mpi="/usr/lib64/openmpi"
205	else
206	root_mpi="/usr"
207	fi
208	# For Scientifique Linux at LMD :
209	elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 ] ; then
210	path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin ;
211	root_mpi=/usr/lib64/openmpi/1.4.5-gfortran ;
212	export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH
213	else
214	echo "Cannot find mpif90" ;
215	exit ;
216	fi ;
217	par_comp=${path_mpi}/mpif90 ;
218	mpirun=${path_mpi}/mpirun ;
219	arch=local ;
220	make=make ;
221	o_ins_make="-t g95"
222	esac
223
224
225	# MPI_FLAGS are the flags needed for compilation with MPI
226	#MPI_FLAGS="-I/usr/include/openmpi-x86_64 -fcray-pointer"
227	MPI_FLAGS="-fcray-pointer"
228	# MPI_LD are the flags needed for linking with MPI
229	MPI_LD="-L/usr/lib64/openmpi/lib -lmpi"
230	# OMP_FLAGS are the flags needed for compilation with OpenMP
231	OMP_FLAGS="-fopenmp -fcray-pointer"
232	# OMP_LD are the flags needed for linking with OpenMP
233	#OMP_LD="-fopenmp -L/usr/lib64 -lnuma"
234	OMP_LD="-fopenmp"
235
236
237	#####################################################################
238	# Test for old gfortran compilers
239	# If the compiler is too old (older than 4.3.x) we test if the
240	# temporary gfortran44 patch is available on the computer in which
241	# case the compiler is changed from gfortran to gfortran44
242	# Must be aware than parallelism can not be activated in this case
243	#####################################################################
244
245	if [ "$compilo" = "gfortran" ] ; then
246	gfortran=gfortran
247	gfortranv=`gfortran --version \| \
248	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
249	if [ $gfortranv -le 43 ] ; then
250	echo ERROR : Your gfortran compiler is too old
251	echo 'Please choose a new one (ifort) and change the line'
252	echo compilo=xxx
253	echo in the install.sh script and rerun it
254	if [ `which gfortran44 \| wc -w` -ne 0 ] ; then
255	gfortran=gfortran44
256	else
257	echo gfotran trop vieux ; exit
258	fi
259	fi
260	compilo=$gfortran
261	fi
262	#####################################################################
263
264	## if also compiling XIOS, parallel must be mpi_omp
265	if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then
266	echo "Error, you must set -parallel mpi_omp if you want XIOS"
267	exit
268	fi
269	if [ "$with_xios" = "y" ] ; then
270	opt_makelmdz_xios="-io xios"
271	fi
272
273	echo '################################################################'
274	echo Choix des options de compilation
275	echo '################################################################'
276
277	export FC=$compilo
278	export F90=$compilo
279	export F77=$compilo
280	export CPPFLAGS=
281	OPTIMNC=$OPTIM
282	BASE_LD="$OPT_GPROF"
283	OPTPREC="$OPT_GPROF"
284	ARFLAGS="rs" ; if [ -f /etc/issue ] ; then if [ "`grep -i ubuntu /etc/issue`" != "" ] ; then if [ "`grep -i ubuntu /etc/issue \| awk ' { print $2 } ' \| cut -d. -f1`" -ge 16 ] ; then ARFLAGS="rU" ; fi ; fi ; fi
285
286
287
288	if [ "$compilo" = "$gfortran" ] ; then
289	OPTIM='-O3'
290	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=nan"
291	OPTDEV="-Wall -fbounds-check"
292	fmod='I '
293	OPTPREC="$OPTPREC -cpp -ffree-line-length-0"
294	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi
295	export F90FLAGS=" -ffree-form $OPTIMNC"
296	export FFLAGS=" $OPTIMNC"
297	export CC=gcc
298	export CXX=g++
299	export fpp_flags="-P -C -traditional -ffreestanding"
300
301	elif [ $compilo = mpif90 ] ; then
302	OPTIM='-O3'
303	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all"
304	OPTDEV="-Wall -fbounds-check"
305	BASE_LD="$BASE_LD -lblas"
306	fmod='I '
307	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi
308	export F90FLAGS=" -ffree-form $OPTIMNC"
309	export FFLAGS=" $OPTIMNC"
310	export CC=gcc
311	export CXX=g++
312
313	elif [ $compilo = pgf90 ] ; then
314	OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align'
315	OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback'
316	OPTDEV='-g -Mbounds -Ktrap=fp -traceback'
317	fmod='module '
318	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi
319	export CPPFLAGS="-DpgiFortran"
320	export CC=pgcc
321	export CFLAGS="-O2 -Msignextend"
322	export CXX=pgCC
323	export CXXFLAGS="-O2 -Msignextend"
324	export FFLAGS="-O2 $OPTIMNC"
325	export F90FLAGS="-O2 $OPTIMNC"
326	compile_with_fcm=1
327
328	elif [ $compilo = ifort ] ; then
329	OPTIM="-O2 -fp-model strict -ip -align all "
330	OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check"
331	OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check"
332	fmod='module '
333	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
334	export CPP="icc -E"
335	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
336	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
337	export CC=icc
338	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
339	export CXX=icpc
340	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
341	compile_with_fcm=1
342
343	else
344	echo unexpected compiler $compilo ; exit
345	fi
346
347	OPTIMGCM="$OPTIM $OPTPREC"
348
349	hostname=`hostname`
350
351	##########################################################################
352	# If installing on know machines such as IBM x3750 (Ada)
353	# at IDRIS, don't check for available software and don"t install netcdf
354	if [ ${hostname:0:5} = ada33 ] ; then
355	netcdf=0 # no need to recompile netcdf, alreday available
356	check_linux=0
357	pclinux=0
358	ioipsl=1 # no need to recompile ioipsl, already available
359	#netcdf="/smplocal/pub/NetCDF/4.1.3"
360	compilo="ifort"
361	fmod='module '
362	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
363	OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
364	OPTIMGCM="$OPTIM $OPTPREC"
365	fi
366	##########################################################################
367
368
369
370	mkdir -p $MODEL
371	echo $MODEL
372	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
373
374
375
376	# Option -fendian=big is only to be used with ARPEGE1D.
377	# The -r8 should probably be avoided if running on 32 bit machines
378	# Option r8 is not mandatory and generates larger executables.
379	# It is however mandatory if using ARPEGE1D
380	# Better optimization options might be a better choice (e.g. -O3)
381
382
383	echo '################################################################'
384	if [ "$check_linux" = 1 ] ; then
385	echo Check if required software is available
386	echo '################################################################'
387
388	#### Ehouarn: test if ksh and/or bash are available
389	use_shell="ksh" # default: use ksh
390	if [ "`which ksh`" = "" ] ; then
391	echo "no ksh ... we will use bash"
392	use_shell="bash"
393	if [ "`which bash`" = "" ] ; then
394	echo "ksh (or bash) needed!! Install it!"
395	fi
396	fi
397
398
399	for logiciel in csh wget tar gzip make $compilo gcc ; do
400	if [ "`which $logiciel`" = "" ] ; then
401	echo You must first install $logiciel on your system
402	exit
403	fi
404	done
405
406	if [ $pclinux = 1 ] ; then
407	cd $MODEL
408	cat <<eod > tt.f90
409	print*,'coucou'
410	end
411	eod
412	$compilo tt.f90 -o a.out
413	./a.out >\| tt
414	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
415	echo problem installing with compiler $compilo ; exit ; fi
416	\rm tt a.out tt.f90
417	fi
418	fi
419
420	###########################################################################
421	if [ $getlmdzor = 1 ] ; then
422	echo '##########################################################'
423	echo Download a slightly modified version of LMDZ
424	echo '##########################################################'
425	cd $MODEL
426	myget src/modipsl.$version.tar.gz
427	echo install.sh wget_OK `date`
428	gunzip modipsl.$version.tar.gz
429	tar xvf modipsl.$version.tar
430	\rm modipsl.$version.tar
431
432	fi
433
434	echo OK1
435
436	if [ $netcdf = 1 ] ; then
437	echo '##########################################################'
438	echo Compiling the Netcdf library
439	echo '##########################################################'
440	cd $MODEL
441	if [ "$with_xios" = "n" ] ; then
442	# keep it simple
443	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/netcdf-4.0.1.tar.gz
444	myget import/netcdf-4.0.1.tar.gz
445	gunzip netcdf-4.0.1.tar.gz
446	tar xvf netcdf-4.0.1.tar
447	\rm -f netcdf-4.0.1.tar
448
449	cd netcdf-4.0.1
450
451	# seds to possibly use gfortran44 obsolete nowdays (Ehouarn: 10/2017)
452	#sed -e 's/gfortran/'$gfortran'/g' configure >\| tmp ; mv -f tmp configure ; chmod +x configure
453	localdir=`pwd -P`
454	./configure --prefix=$localdir --enable-shared --disable-cxx
455	#sed -e 's/gfortran/'$gfortran'/g' Makefile >\| tmp ; mv -f tmp Makefile
456	$make check
457	$make install
458	else
459	# download and compile hdf5 and netcdf, etc. using the install_netcdf4_hdf5.bash script
460	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_netcdf4_hdf5.bash
461	myget import/install_netcdf4_hdf5.bash
462	chmod u=rwx install_netcdf4_hdf5.bash
463	if [ "$compilo" = "gfortran" ] ; then
464	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC gcc -FC gfortran -CXX g++ -MPI $root_mpi
465	elif [ "$compilo" = "ifort" ] ; then
466	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC icc -FC ifort -CXX icpc -MPI $root_mpi
467	elif [ "$compilo" = "pgf90" ] ; then
468	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC pgcc -FC pgf90 -CXX pgCC -MPI $root_mpi
469	else
470	echo "unexpected compiler $compilo" ; exit
471	fi
472	fi # of if [ "$with_xios" = "n" ]
473	echo install.sh netcdf_OK `date`
474	fi # of if [ $netcdf = 1 ]
475
476
477	#=======================================================================================
478	echo OK2 ioipsl=$ioipsl
479	echo '##########################################################'
480	echo 'Installing MODIPSL, the installation package manager for the '
481	echo 'IPSL models and tools'
482	echo '##########################################################'
483
484	if [ $netcdf = 0 -o $netcdf = 1 ] ; then
485	if [ "$with_xios" = "y" ] ; then
486	ncdfdir=$MODEL/netcdf4_hdf5
487	else
488	ncdfdir=$MODEL/netcdf-4.0.1
489	fi
490	else
491	ncdfdir=$netcdf
492	fi
493
494	if [ $ioipsl = 1 ] ; then
495	cd $MODEL/modipsl
496	\rm -rf lib/*
497
498	cd util
499
500	cp AA_make.gdef AA_make.orig
501	F_C="$compilo -c " ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then F_C="$compilo -c -cpp " ; fi
502	if [ "$compilo" = "pgf90" ] ; then F_C="$compilo -c -Mpreprocess" ; fi
503	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
504	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \
505	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
506	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
507	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \
508	-e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \
509	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
510	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
511	tmp >\| AA_make.gdef
512
513
514	# We use lines for g95 even for the other compilers to run ins_make
515	if [ "$use_shell" = "ksh" ] ; then
516	./ins_make $o_ins_make
517	else # bash
518	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
519	if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar
520	\cp -f ~rdzt401/bin/AA_make.gdef .
521	fi
522	chmod u=rwx ins_make.bash
523	./ins_make.bash $o_ins_make
524	fi # of if [ "$use_shell" = "ksh" ]
525
526	#=======================================================================================
527	echo '##########################################################'
528	echo 'Compiling IOIPSL, the interface library with Netcdf'
529	echo '##########################################################'
530
531	cd $MODEL/modipsl/modeles/IOIPSL/src
532	if [ "$use_shell" = "bash" ] ; then
533	cp Makefile Makefile.ksh
534	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
535	fi
536	# if [ "$pclinux" = 1 ] ; then
537	# Build IOIPSL modules and library
538	echo EOEOFOOEOOOOOOOOOOOOOOOOOOOOOOOOOOOO
539	$make clean
540	$make
541	if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then # copy module files to lib
542	cp -f *.mod ../../../lib
543	fi
544	# Build IOIPSL tools (ie: "rebuild", if present)
545	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
546	cd $MODEL/modipsl/modeles/IOIPSL/tools
547	# adapt Makefile & rebuild script if in bash
548	if [ "$use_shell" = "bash" ] ; then
549	cp Makefile Makefile.ksh
550	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
551	cp rebuild rebuild.ksh
552	sed -e 's:/bin/ksh:/bin/bash:g' \
553	-e 's:print -u2:echo:g' \
554	-e 's:print:echo:g' rebuild.ksh > rebuild
555	fi
556	$make clean
557	$make
558	fi
559	# fi # of if [ "$pclinux" = 1 ]
560
561	else # of if [ $ioipsl = 1 ]
562	if [ ${hostname:0:5} = ada33 ] ; then
563	cd $MODEL/modipsl
564	cd util
565
566	cp AA_make.gdef AA_make.orig
567	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
568	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
569	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
570	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \
571	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \
572	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
573	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
574	tmp >\| AA_make.gdef
575
576	./ins_make $o_ins_make # We use lines for g95 even for the other compilers
577
578	# on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS
579	# so link it to current settings
580	cd $MODEL/modipsl/modeles/
581	\rm -r -f IOIPSL
582	ln -s ~rpsl035/IOIPSL_PLUS IOIPSL
583	cd ..
584	ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/bin/* bin/
585	ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/lib/* lib/
586
587	fi # of if [ ${hostname:0:5} = ada33 ]
588	echo install.sh ioipsl_OK `date`
589	fi # of if [ $ioipsl = 1 ]
590	# Saving ioipsl lib for possible parallel compile
591	cd $MODEL/modipsl
592	tar cf ioipsl.tar lib/ bin/
593
594	#===========================================================================
595	if [ "$with_xios" = "y" ] ; then
596	echo '##########################################################'
597	echo 'Compiling XIOS'
598	echo '##########################################################'
599	cd $MODEL/modipsl/modeles
600	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash
601	myget import/install_xios.bash
602	chmod u=rwx install_xios.bash
603	./install_xios.bash -prefix $MODEL/modipsl/modeles \
604	-netcdf ${ncdfdir} -hdf5 ${ncdfdir} \
605	-MPI $root_mpi -arch $arch
606	fi
607
608	#============================================================================
609	veget_version=false
610	if [ "$veget" = 1 ] ; then
611	echo '########################################################'
612	echo 'Compiling ORCHIDEE, the continental surfaces model '
613	echo '########################################################'
614	cd $MODEL/modipsl/modeles/ORCHIDEE
615	export ORCHPATH=`pwd`
616	if [ -d tools ] ; then
617	orchidee_rev=2247
618	veget_version=orchidee2.0
619	cd arch
620	sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \
621	-e s:"%LINK .*.$":"%LINK $compilo":1 \
622	-e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \
623	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
624	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
625	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
626	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
627	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
628	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
629	arch-gfortran.fcm > arch-local.fcm
630	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path
631	echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path
632	echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path
633	echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path
634	cd ../
635	# compiling ORCHIDEE sequential mode
636	./makeorchidee_fcm -j 8 -noxios -prod -parallel none -arch $arch
637	echo ./makeorchidee_fcm -j 8 -noxios -prod -parallel none -arch $arch
638	echo Fin de la premiere compilation orchidee ; pwd
639	else
640	if [ -d src_parallel ] ; then
641	liste_src="parallel parameters global stomate sechiba driver"
642	veget_version=orchidee2.0
643	else
644	# Obsolete, for ORCHIDEE_beton only
645	liste_src="parameters stomate sechiba "
646	# A trick to compile ORCHIDEE depending on if we are using real4 or real8
647	cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd ..
648	veget_version=orchidee1.9
649	fi
650	for d in $liste_src ; do src_d=src_$d
651	echo src_d $src_d
652	echo ls ; ls
653	if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi
654	cd $src_d ; \rm -f *.mod make ; $make clean
655	$make ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi
656	cd ..
657	done
658	fi
659	echo install.sh orchidee_OK `date`
660	fi # of if [ "$veget" = 1 ]
661
662
663	#============================================================================
664	# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
665	if [ -d $MODEL/modipsl/modeles/LMD* ] ; then
666	echo '##########################################################'
667	echo 'Compiling LMDZ'
668	echo '##########################################################'
669	cd $MODEL/modipsl/modeles/LMD*
670	LMDZPATH=`pwd`
671	else
672	echo "ERROR: No LMD* directory !!!"
673	exit
674	fi
675
676	###########################################################
677	# For those who want to use fcm to compile via :
678	# makelmdz_fcm -arch local .....
679	############################################################
680
681	if [ "$pclinux" = "1" ] ; then
682
683	# create local 'arch' files (if on Linux PC):
684	cd arch
685	# arch-local.path file
686	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path
687	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
688	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
689	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
690	echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path
691	echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path
692	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
693	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
694
695	BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
696	# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
697
698	if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi
699	sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \
700	-e s:"%LINK .*.$":"%LINK $compilo":1 \
701	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
702	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
703	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
704	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
705	-e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \
706	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
707	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
708	arch-linux-32bit.fcm > arch-local.fcm
709
710	cd ..
711	### Adapt "bld.cfg" (add the shell):
712	whereisthatshell=$(which ${use_shell})
713	echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
714
715	fi # of if [ "$pclinux" = 1 ]
716
717
718	cd $MODEL/modipsl/modeles/LMDZ*
719
720	##################################################################
721	# Possibly update LMDZ if a specific svn release is requested
722	##################################################################
723
724	if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi
725	if [ "$svn" != "" ] ; then set +e ; svn upgrade ; set -e ; svn update $svnopt ; fi
726
727	##################################################################
728	# Compile LMDZ
729	##################################################################
730
731	echo install.sh avant_compilation `date`
732	if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm -arch $arch -j 8" ; else makelmdz="makelmdz -arch $arch" ; fi
733
734	# use the orchidee interface that has no z0h
735	if [ "$no_z0h_orc" = 1 ] ; then
736	veget_version="$veget_version -cpp ORCHIDEE_NOZ0H"
737	fi
738
739	# sequential compilation and bench
740	if [ "$sequential" = 1 ] ; then
741	echo "./$makelmdz $OPT_MAKELMDZ -rrtm true -d ${grid_resolution} -v $veget_version gcm" >> compile.sh
742	chmod +x ./compile.sh ; ./compile.sh
743	echo install.sh apres_compilation `date`
744
745
746	fi # fin sequential
747
748
749
750	# compiling in parallel mode
751	if [ $parallel != "none" ] ; then
752	echo '##########################################################'
753	echo ' Parallel compile '
754	echo '##########################################################'
755	# saving the sequential libs and binaries
756	cd $MODEL/modipsl
757	tar cf sequential.tar bin/ lib/
758	\rm -rf bin/ lib/
759	tar xf ioipsl.tar
760	#
761	# Orchidee
762	#
763	cd $ORCHPATH
764	if [ -d src_parallel ] ; then
765	cd arch
766	sed \
767	-e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
768	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
769	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
770	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
771	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
772	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
773	arch-local.fcm > tmp.fcm
774
775	mv tmp.fcm arch-local.fcm
776	cd ../
777	# compiling ORCHIDEE parallel mode
778	./makeorchidee_fcm -j 8 -clean -noxios -prod -parallel $parallel -arch $arch
779	./makeorchidee_fcm -j 8 -noxios -prod -parallel $parallel -arch $arch
780	echo ./makeorchidee_fcm -j 8 -clean -noxios -prod -parallel $parallel -arch $arch
781	echo ./makeorchidee_fcm -j 8 -noxios -prod -parallel $parallel -arch $arch
782	echo deuxieme compilation orchidee ; pwd
783	else
784	echo '##########################################################'
785	echo ' Orchidee version too old '
786	echo ' Please update to new version '
787	echo '##########################################################'
788	exit
789	fi # of if [ -d src_parallel ]
790	# LMDZ
791	cd $LMDZPATH
792	if [ $arch = local ] ; then
793	cd arch
794	sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
795	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
796	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
797	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
798	-e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \
799	-e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \
800	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
801	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
802	arch-local.fcm > tmp.fcm
803	mv tmp.fcm arch-local.fcm
804	cd ../
805	fi
806	rm -f compile.sh
807	if [ ${hostname:0:5} = ada33 ] ; then echo "module load intel/2013.0" > compile.sh ; fi
808	echo resol=${grid_resolution} >> compile.sh
809	echo ./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh
810	chmod +x ./compile.sh ; ./compile.sh
811
812	echo "Compilation finished"
813
814	fi # of if [ $parallel != "none" ]
815
816	echo LLLLLLLLLLLLLLLLLLLLLLLLLLL
817	if [ "$gfortran" = "gfortran44" ] ; then
818	echo Your gfortran compiler was too old so that the model was automatically
819	echo compiled with gfortran44 instead. It can not be used in parallel mode.
820	echo You can change the compiler at the begining of the install.sh
821	echo script and reinstall.
822	fi
823
824	##################################################################
825	# Verification du succes de la compilation
826	##################################################################
827
828	# Recherche de l'executable dont le nom a change au fil du temps ...
829	gcm=""
830	for exe in gcm.e bin/gcm_${grid_resolution}_phylmd_seq_orch.e bin/gcm_${grid_resolution}_phylmd_seq.e bin/gcm_${grid_resolution}_phylmd_para_mem_orch.e ; do
831	if [ -f $exe ] ; then gcm=$exe ; fi
832	done
833
834	if [ "$gcm" = "" ] ; then
835	echo 'Compilation failed !!'
836	# Ehouarn : temporary, do not exit and let job finish (to set up bench case)
837	#exit
838	set +e
839	else
840	echo '##########################################################'
841	echo 'Compilation successfull !! '
842	echo '##########################################################'
843	echo The executable is $gcm
844	fi
845
846	##################################################################
847	# Below, we run a benchmark test (if bench=0)
848	##################################################################
849
850	if [ $bench != 0 ] ; then
851
852	echo '##########################################################'
853	echo ' Running a test run '
854	echo '##########################################################'
855
856	\rm -rf BENCH${grid_resolution}
857	bench=bench_lmdz_${grid_resolution}
858	echo install.sh avant_chargement_bench `date`
859	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz
860	myget 3DBenchs/$bench.tar.gz
861	echo install.sh after bench download `date`
862	tar xvf $bench.tar.gz
863
864	if [ "$with_xios" = "y" ] ; then
865	cd BENCH${grid_resolution}
866	cp ../DefLists/iodef.xml .
867	cp ../DefLists/context_lmdz.xml .
868	cp ../DefLists/field_def_lmdz.xml .
869	cp ../DefLists/file_def_hist*xml .
870	# adapt iodef.xml to use attached mode
871	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' iodef.xml > tmp
872	\mv -f tmp iodef.xml
873	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
874	# except for histday
875	for histfile in file_def_hist*xml
876	do
877	if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then
878	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile
879	else
880	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' $histfile > tmp ; \mv -f tmp $histfile
881	fi
882	done
883	# and add option "ok_all_xml=y" in config.def
884	echo "### XIOS outputs" >> config.def
885	echo 'ok_all_xml=.true.' >> config.def
886	cd ..
887	fi
888
889	cp $gcm BENCH${grid_resolution}/gcm.e
890
891	cd BENCH${grid_resolution}
892	# On cree le fichier bench.sh au besoin
893	# Dans le cas 48x36x39 le bench.sh existe deja en parallele
894
895	if [ "$grid_resolution" = "48x36x39" ] ; then
896	echo On ne touche pas au bench.sh
897	# But we have to adapt "run_local.sh" for $mpirun
898	sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp
899	mv -f tmp run_local.sh
900	chmod u=rwx run_local.sh
901	elif [ "${parallel:0:3}" = "mpi" ] ; then
902	# Lancement avec deux procs mpi et 2 openMP
903	echo "export OMP_STACKSIZE=800M" > bench.sh
904	if [ "${parallel:4:3}" = "omp" ] ; then
905	echo "export OMP_NUM_THREADS=2" >> bench.sh
906	fi
907	echo "ulimit -s unlimited" >> bench.sh
908	echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh
909	else
910	echo "./gcm.e > listing 2>&1" > bench.sh
911	fi
912	echo EXECUTION DU BENCH
913	set +e
914	date ; ./bench.sh > out.bench 2>&1 ; date
915	set -e
916	tail listing
917
918
919	echo '##########################################################'
920	echo 'Simulation finished in' `pwd`
921	echo 'You have compiled with:'
922	cat ../compile.sh
923	if [ $parallel = "none" ] ; then
924	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
925	echo 'or ./bench.sh'
926	else
927	echo 'You may re-run it with : '
928	echo 'cd ' `pwd` '; ./bench.sh'
929	echo 'ulimit -s unlimited'
930	echo 'export OMP_NUM_THREADS=2'
931	echo 'export OMP_STACKSIZE=800M'
932	echo "$mpirun -np 2 gcm.e "
933	fi
934	echo '##########################################################'
935
936	fi
937
938
939	#################################################################
940	# Installation eventuelle du 1D
941	#################################################################
942
943	if [ $SCM = 1 ] ; then
944	cd $MODEL
945	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz
946	myget 1D/1D.tar.gz
947	tar xvf 1D.tar.gz
948	cd 1D
949	./run.sh
950	fi

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